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BergelsonLab

4 indexed repositories · View on GitHub

blabr

R · 1 star
add_samples
Adds 5 new 2-min code sections to existing eaf files

Python · 0 stars
generate_all_bl

R · 0 stars
blabpy
Python package to facilitate lab work

Python · 0 stars

Open All

73 open issues indexed

please do merge into aclew Open

BergelsonLab/add_samples#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add a README Open

help wanted

BergelsonLab/generate_all_bl#1 · 1 comment · 0 reactions · 3 assignees · Indexed Sep 14, 2026
allow user to ignore missing Seedlings files Open

BergelsonLab/blabpy#1 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
write logs to the output directory, not the current one Open

BergelsonLab/blabpy#2 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
zero-duration should be dealt with in the cha files, not in the code Open

BergelsonLab/blabpy#3 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
unomment timestamp consistency checks Open

BergelsonLab/blabpy#4 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
parallelize all seedlings-level pipeline operations Open

BergelsonLab/blabpy#6 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
substitute logging for all prints Open

BergelsonLab/blabpy#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
do not merge with basic level data on NA annotid Open

bug

BergelsonLab/blabpy#8 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
remove listened_time._process_regions - not used anywhere Open

listen time

BergelsonLab/blabpy#10 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean listened_time functions once we are done Open

listen time

BergelsonLab/blabpy#11 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean up the logic of removing subregions with makeup/extra overlapping Open

listen time

BergelsonLab/blabpy#12 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
deal with non-empty folder errors when running make_updated_basic_level_files Open

enhancement

BergelsonLab/blabpy#13 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
refactor tests Open

BergelsonLab/blabpy#14 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add io functions for various csv files Open

BergelsonLab/blabpy#15 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
use explicit NA for the pho column Open

BergelsonLab/blabpy#16 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
path lookup should (?) all check that the path exists Open

BergelsonLab/blabpy#17 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
vihi.paths: checking ids should be a decorator Open

refactor

BergelsonLab/blabpy#18 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
upload blabpy to a conda channel Open

BergelsonLab/blabpy#19 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add function to easily concatenate dataframe Open

BergelsonLab/blabpy#20 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
drop annotation count from blabpy.listen_time.preprocess_region_info Open

BergelsonLab/blabpy#21 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean up "pipeline" modules Open

BergelsonLab/blabpy#22 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add missing fields to setup.py Open

BergelsonLab/blabpy#23 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add days_to_months function Open

BergelsonLab/blabpy#24 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
remove caching from seedlings.paths Open

bug

BergelsonLab/blabpy#25 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
write a `map_plus` function Open

BergelsonLab/blabpy#26 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
pandas helper: where join Open

BergelsonLab/blabpy#27 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
avoid printing traceback for console script errors Open

BergelsonLab/blabpy#29 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
make git cloning progress bar prettier Open

good first issue

BergelsonLab/blabpy#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add `vihi annotation update-links` Open

BergelsonLab/blabpy#32 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
CHA files function not working Open

BergelsonLab/blabpy#34 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
its.py new sub_recording column names Open

bug

BergelsonLab/blabpy#35 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
big_aggregate missing documentation Open

BergelsonLab/blabr#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
a function for by-kid, by-item cdi info Open

BergelsonLab/blabr#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
get_windows needs to have an argument to set TargetOnset Open

BergelsonLab/blabr#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add Description to DESCRIPTION Open

long overdue

BergelsonLab/blabr#13 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add missing documentation (lots!) Open

BergelsonLab/blabr#14 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
fix inconistent docs Open

might already be done

BergelsonLab/blabr#15 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add examples to functions Open

might already be done

BergelsonLab/blabr#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
[possibly] switch to using roxygen for maintaining NAMESPACE Open

might already be done

BergelsonLab/blabr#17 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add `expect_column_hashes_to_be_equal` to `test-helpers.R` Open

might already be done refactor

BergelsonLab/blabr#20 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add `io.R` to have all read/write functions in one place Open

refactor

BergelsonLab/blabr#21 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
sample_intervals_with_highest should stop if there are NAs Open

BergelsonLab/blabr#22 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
fix assertthat assertions Open

bug might already be done

BergelsonLab/blabr#23 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
rewrite calculate_lena_like_stats using add_lena_stats Open

might already be done

BergelsonLab/blabr#24 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
teach prepare_intervals to output aclew-like intervals Open

enhancement

BergelsonLab/blabr#25 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean up get_lena_speaker_stats Open

enhancement

BergelsonLab/blabr#26 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
export public-facing functions Open

BergelsonLab/blabr#27 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
get_pn_opus_path does not return anything Open

BergelsonLab/blabr#28 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
update DESCRIPTION Open

BergelsonLab/blabr#29 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026

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