BergelsonLab/blabpy

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Python package to facilitate lab work

Stars: 0
Forks: 0
Open beginner issues: 0
Indexed issues: 30

Dominant language: Python
License: MIT
Last GitHub push: Aug 3, 2026
Latest indexed: Sep 14, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

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30 open issues indexed

allow user to ignore missing Seedlings files Open

BergelsonLab/blabpy#1 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
write logs to the output directory, not the current one Open

BergelsonLab/blabpy#2 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
zero-duration should be dealt with in the cha files, not in the code Open

BergelsonLab/blabpy#3 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
unomment timestamp consistency checks Open

BergelsonLab/blabpy#4 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
parallelize all seedlings-level pipeline operations Open

BergelsonLab/blabpy#6 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
substitute logging for all prints Open

BergelsonLab/blabpy#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
do not merge with basic level data on NA annotid Open

bug

BergelsonLab/blabpy#8 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
remove listened_time._process_regions - not used anywhere Open

listen time

BergelsonLab/blabpy#10 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean listened_time functions once we are done Open

listen time

BergelsonLab/blabpy#11 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean up the logic of removing subregions with makeup/extra overlapping Open

listen time

BergelsonLab/blabpy#12 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
deal with non-empty folder errors when running make_updated_basic_level_files Open

enhancement

BergelsonLab/blabpy#13 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
refactor tests Open

BergelsonLab/blabpy#14 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add io functions for various csv files Open

BergelsonLab/blabpy#15 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
use explicit NA for the pho column Open

BergelsonLab/blabpy#16 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
path lookup should (?) all check that the path exists Open

BergelsonLab/blabpy#17 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
vihi.paths: checking ids should be a decorator Open

refactor

BergelsonLab/blabpy#18 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
upload blabpy to a conda channel Open

BergelsonLab/blabpy#19 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add function to easily concatenate dataframe Open

BergelsonLab/blabpy#20 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
drop annotation count from blabpy.listen_time.preprocess_region_info Open

BergelsonLab/blabpy#21 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
clean up "pipeline" modules Open

BergelsonLab/blabpy#22 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add missing fields to setup.py Open

BergelsonLab/blabpy#23 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add days_to_months function Open

BergelsonLab/blabpy#24 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
remove caching from seedlings.paths Open

bug

BergelsonLab/blabpy#25 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
write a `map_plus` function Open

BergelsonLab/blabpy#26 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
pandas helper: where join Open

BergelsonLab/blabpy#27 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
avoid printing traceback for console script errors Open

BergelsonLab/blabpy#29 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
make git cloning progress bar prettier Open

good first issue

BergelsonLab/blabpy#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add `vihi annotation update-links` Open

BergelsonLab/blabpy#32 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
CHA files function not working Open

BergelsonLab/blabpy#34 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
its.py new sub_recording column names Open

bug

BergelsonLab/blabpy#35 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

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