biocore/LabControl

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lab manager for plate maps and sequence flows

Stars: 2
Forks: 15
Open beginner issues: 0
Indexed issues: 123

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 12, 2019
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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123 open issues indexed

Allow re-adding of previously deleted contact when preparing sequencing run Open

bug priority:low scope:small

biocore/LabControl#371 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Limit i5/i7 primer plate selection in shotgun library prep to relevant working primer plates Open

enhancement priority:medium scope:small

biocore/LabControl#372 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Refactor BaseDownloadHandler.deliver_zip to take in uncompressed content and compress it Open

code refactor scope:small

biocore/LabControl#380 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add new `was_pooled` field to amplicon prep file for blanks Open

feature request scope:medium

biocore/LabControl#387 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Comb codebase for sql queries incorrectly linking specialized composition ids to generic composition ids Open

code refactor priority:low scope:small

biocore/LabControl#391 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Silent 500 errors when plating samples Open

priority:high

biocore/LabControl#405 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Labcontrol is creating extra plates Open

bug priority:high

biocore/LabControl#406 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Changes in Qiita Dev should trigger Labcontrol integration test Open

priority:low

biocore/LabControl#408 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 14, 2026
Move labman.primer_set 18S and ITS inserts from db_patch_manual.sql into the populate_prod_db.sql Open

bug priority:low

biocore/LabControl#416 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Echo Pick List cannot be (re)downloaded Open

priority:high

biocore/LabControl#417 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add target to Plate.list_plates Open

priority:high

biocore/LabControl#419 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Instrument_model is a standard vocabulary in EBI Open

priority:high question scope:small

biocore/LabControl#430 · 17 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Pull-down menu in Prepare Sequencing Runs page should only list PIs Open

priority:low

biocore/LabControl#435 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Test LC plating across multiple studies Open

priority:medium

biocore/LabControl#437 · 4 comments · 0 reactions · 2 assignees · Indexed Sep 14, 2026
Plate external_ids (names) should not be left blank. Open

priority:medium

biocore/LabControl#441 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Support mini 16S protocol in Labcontrol Open

priority:high scope:large

biocore/LabControl#443 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Modify generate_prep_information to correctly create prep sheets for sequencing runs based on library plate pools Open

bug priority:medium scope:medium

biocore/LabControl#444 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Manually advance combo index dialog Open

feature request priority:low scope:large

biocore/LabControl#447 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Remove duplication of plate creation date info in db Open

code refactor

biocore/LabControl#449 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Capture max_vol_per_well from GUI and store in DB somewhere Open

scope:large

biocore/LabControl#454 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Duplicate name testing is not asserted on prepare shotgun libraries Open

bug priority:high

biocore/LabControl#470 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Are transactions rolled back during failure? Open

biocore/LabControl#472 · 13 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
gDNA page blocks the webserver without UI indication Open

bug priority:high

biocore/LabControl#473 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Exception when preparing an amplicon library with a 384 well plate Open

bug priority:high

biocore/LabControl#475 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Viewing multiple plates locks up the webserver Open

bug priority:high

biocore/LabControl#476 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Pool amplicon libraries allows for 0 concentration triggering an exception Open

bug priority:high

biocore/LabControl#478 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Should pool names be unique? Open

priority:high

biocore/LabControl#479 · 5 comments · 1 reaction · 1 assignee · Indexed Sep 14, 2026
Updating values for DNA conc in Prepare Sequencing Pool does not update calculations until field loses focus Open

priority:low

biocore/LabControl#481 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Plate list page allows users to send unquantified compressed gdna plates to normalization page, which leads to error Open

bug priority:low

biocore/LabControl#485 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Increasing the defensiveness of the add plate modal Open

biocore/LabControl#486 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Unable to change contents of cell on sample plate Open

bug priority:high

biocore/LabControl#490 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Verify correctness of LabControlObject's __hash__ and __eq__ methods Open

priority:low

biocore/LabControl#494 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Sample ID to tube ID information Open

feature request front-end priority:low

biocore/LabControl#495 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Support for Nextera and other library preparations Open

biocore/LabControl#503 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Record platform of sequencer in database rather than hard-coding as "Illumina" Open

enhancement scope:medium

biocore/LabControl#507 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Output compression robot name in shotgun prep sheet? Open

enhancement priority:low question

biocore/LabControl#508 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Centralize and harden identification of pool component types Open

code refactor scope:medium

biocore/LabControl#509 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
PoolListHandler.get would identify pools from future new protocols as amplicon sequencing pools Open

biocore/LabControl#510 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Check to ensure samples that get a SequencingProcess._generate_sample_proj_value of None are NOT experimental? Open

biocore/LabControl#511 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Provide more explicit capture of error from PoolListHandler.get given unknown pool type? Open

biocore/LabControl#512 · 2 comments · 0 reactions · 3 assignees · Indexed Sep 14, 2026
Review underlaying commit behavior of sql_connection.py Open

biocore/LabControl#517 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Scrub codebase to harden well name (e.g. 'A1') generation/use code that cannot handle >26 rows Open

biocore/LabControl#518 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Studies associated with a plate disappear Open

biocore/LabControl#519 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Unexpected cell behavior during plating Open

biocore/LabControl#520 · 1 comment · 0 reactions · 3 assignees · Indexed Sep 14, 2026
Adapter information needs to be recorded Open

priority:medium

biocore/LabControl#530 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Refactor to remove add_plate_modal_dialog.html and replace with use of addPlateModal.js's insertPlateModalDiv Open

code refactor

biocore/LabControl#531 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Prepending study IDs when copying/pasting Open

biocore/LabControl#532 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Case sensitivity when copying and pasting Open

priority:high

biocore/LabControl#533 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Support creating the individual working primer plates in a primer set on different days Open

feature request

biocore/LabControl#535 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Modify Compress gDNA plates to support MiniPCR Open

biocore/LabControl#538 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

biocore/LabControl

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