biocore/LabControl

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lab manager for plate maps and sequence flows

Stars: 2
Forks: 15
Open beginner issues: 0
Indexed issues: 123

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 12, 2019
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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123 open issues indexed

Add parameter to track number of times a lot, primer plate, etc is used and a way to warn if too many uses Open

feature request scope:large

biocore/LabControl#31 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Highlight cells per study Open

feature request scope:medium

biocore/LabControl#52 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Implement repooling functionality Open

feature request scope:large

biocore/LabControl#53 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Create an interface that, given a plate, provides its ancestry and descendency Open

feature request priority:medium scope:large

biocore/LabControl#77 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Refactor backend to rename 16S to amplicon Open

code refactor scope:medium

biocore/LabControl#91 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add comment box in gDNA plate extraction Open

feature request scope:medium

biocore/LabControl#128 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Implement unit tests for javascript functionality Open

code refactor priority:high scope:large

biocore/LabControl#171 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Stress test the software Open

enhancement priority:high scope:large

biocore/LabControl#173 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Idea: Is there any way to integrate a biosafetly level warning button that goes away once the samples are extracted? Open

feature request scope:unknown

biocore/LabControl#179 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
export all plate maps from a single study to a tsv/excel file Open

feature request scope:unknown

biocore/LabControl#190 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Ensure that data duplication by "contents" field in sample_composition is acceptable Open

code refactor priority:high scope:large

biocore/LabControl#220 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add ENV_package to sample sheet Open

feature request priority:high scope:medium

biocore/LabControl#227 · 22 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Make a more generalized 'upstream' connector in composition objects/tables? Open

code refactor scope:large

biocore/LabControl#234 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Change sample sheet Sample_ID and Sample_Name to use actual sample id instead of sample "content"? Open

enhancement scope:small wontfix

biocore/LabControl#237 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add comments to multiple wells based on selection Open

feature request scope:large

biocore/LabControl#244 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add tooltips to pooling interface to explain parameter values Open

feature request front-end priority:medium scope:small

biocore/LabControl#249 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
for gDNA plate compression, add diagram to output Open

feature request scope:medium

biocore/LabControl#252 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Prevent creation of sequencing runs without all lanes filled Open

feature request scope:small wontfix

biocore/LabControl#261 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Consolidate "components" attribute logic in PoolingProcess and PoolComposition Open

code refactor priority:low scope:small

biocore/LabControl#265 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Move definition of number of lanes per sequencer into database from SequencingProcess Open

code refactor priority:low scope:medium

biocore/LabControl#266 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
View, modify, and search well contents of multiple plates at same time during sample plating Open

feature request priority:medium scope:large

biocore/LabControl#285 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add Primer Date selection in Prepare Amplicon Libraries Open

feature request priority:low training wontfix

biocore/LabControl#289 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Verify correct display of blanks in quantitation heatmap and add legend explaining Open

enhancement front-end priority:medium scope:small

biocore/LabControl#292 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Determine how wet lab models inputs for amplicon pool library plates and decide on interface changes to address Open

enhancement front-end scope:medium scope:small

biocore/LabControl#293 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Update labeling on Prepare Amplicon Sequencing Pool page Open

enhancement front-end priority:medium scope:small

biocore/LabControl#294 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Allow filtering by plate type in all plate selection steps Open

feature request priority:high scope:medium

biocore/LabControl#297 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add labeling on PicoGreen Quantification page indicating expected format for files to be uploaded Open

enhancement front-end priority:medium scope:small

biocore/LabControl#298 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clarify save status of sample plating in interface Open

enhancement front-end priority:low scope:small

biocore/LabControl#302 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clarify meaning or change iconography for red "remove plate" Xs in interface Open

enhancement front-end priority:medium scope:small

biocore/LabControl#304 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Explicitly indicate which plates go in which quadrant during gDNA compression Open

feature request front-end priority:high scope:medium

biocore/LabControl#305 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Reposition or clarify location of Download buttons in interface Open

enhancement front-end priority:medium scope:small

biocore/LabControl#306 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clarify labeling of volume field on Prepare Shotgun Libraries page Open

enhancement front-end priority:high scope:small

biocore/LabControl#308 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Remove or otherwise deprecate "destination tube" field on Pool Library Plates page Open

feature request priority:high scope:small

biocore/LabControl#310 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Relabel and provide convention guidance for "Run Name" and "Run Experiment" on Prepare Sequencing Run page Open

enhancement front-end priority:medium scope:small

biocore/LabControl#311 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clarify in interface how to re-view existing quantitations Open

enhancement front-end priority:medium scope:small

biocore/LabControl#312 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Allow lab to pick which lane a pool goes into on Prepare Sequencing Run page Open

feature request priority:high scope:small

biocore/LabControl#313 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Improve labeling, activation for well comments in Plate Samples Open

enhancement feature request front-end priority:high scope:small

biocore/LabControl#314 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Fix "reformat" option in Normalize gDNA Plates Open

bug priority:high scope:small

biocore/LabControl#323 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Extend Preparation Info file to have an Ext_robot_EP column and an Ext_robot_KF column instead of a single Extraction_robot column Open

feature request priority:high scope:small

biocore/LabControl#324 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Capture sequencing run prep information and insert into prep file Open

feature request scope:large

biocore/LabControl#333 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Improve GUI display of unexpected errors Open

enhancement priority:low scope:medium

biocore/LabControl#338 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Determine correct volume for wells in new gDNA compression plate Open

code refactor priority:medium scope:small

biocore/LabControl#341 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Support generating prep info files for non-Illumina sequencing runs Open

feature request scope:large

biocore/LabControl#342 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Warn user if prep info file contains duplicate samples Open

feature request priority:medium scope:medium

biocore/LabControl#343 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Warn if number of physical samples doesn't match number of samples with metadata Open

feature request priority:low scope:large

biocore/LabControl#344 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Change labman.well table to store row_num and col_num as zero-based Open

code refactor scope:medium

biocore/LabControl#345 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Configuration manager defaults point to non-existent folder Open

bug priority:high scope:small

biocore/LabControl#347 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Prevent silent timeout failure when computing pool values on "Pool library plates" page Open

bug priority:high scope:unknown

biocore/LabControl#361 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Allow viewing of pooling settings for an existing pool made from "Pool library plates" OR "Prepare amplicon sequencing pool" Open

feature request priority:high scope:large

biocore/LabControl#362 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Require run names to be unique or display create time Open

feature request priority:high scope:small

biocore/LabControl#365 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

biocore/LabControl

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