biocore/LabControl

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lab manager for plate maps and sequence flows

Stars: 2
Forks: 15
Open beginner issues: 0
Indexed issues: 123

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 12, 2019
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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123 issues indexed so far

In plating interface, valid sample IDs occasionally "flash" red before turning another color Open

bug front-end question

Difficulty 4/5 3-5 days Newbie friendliness 30/100

biocore/LabControl#594 · Opened Sep 11, 2019
Adding a "being processed" color/border/... to newly plated wells? Or vice versa. Open

front-end question

Difficulty 5/5 Over a week Newbie friendliness 35/100

biocore/LabControl#593 · Opened Sep 11, 2019
Cache list of active samples when the active study is changed in the plating interface Open

front-end

biocore/LabControl#592 · 1 assignee · Opened Sep 11, 2019
Refactor updateUnknownsAndDuplicates to only check certain wells, making it more efficient Open

code refactor front-end

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#591 · Opened Sep 11, 2019
Remove need for hidden section in plate-map-legend Open

priority:low

Difficulty 3/5 1-2 days Newbie friendliness 20/100

biocore/LabControl#590 · Opened Sep 10, 2019
give front-end and back-end test directories the same name Open

priority:low scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

biocore/LabControl#589 · 2 comments · Opened Sep 10, 2019
connection often times out on `test_download` and `test_get_download_normalization_process_handler` Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#588 · 1 comment · Opened Sep 9, 2019
Disable plating interface until at least one study is selected Open

question wontfix

biocore/LabControl#577 · 2 comments · 1 reaction · 1 assignee · Opened Aug 21, 2019
Sanitizing input text for "get" queries? Open

question

Difficulty 3/5 1-2 days Newbie friendliness 45/100

biocore/LabControl#575 · Opened Aug 21, 2019
Adding another study should force a plate mapper update Open

feature request front-end

biocore/LabControl#568 · 1 comment · 1 assignee · Opened Aug 20, 2019
Note re: Slickgrid version Open

front-end priority:low

biocore/LabControl#563 · 3 comments · 1 assignee · Opened Aug 15, 2019
Blocking out MiniPCR UI Open

biocore/LabControl#560 · 1 comment · 2 assignees · Opened Aug 9, 2019
Integrating QC for shotgun data into LabControl Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 15/100

biocore/LabControl#559 · 1 comment · Opened Aug 9, 2019
Can't enter sample info for project 12604 Open

biocore/LabControl#558 · 3 comments · 2 assignees · Opened Aug 6, 2019
Plate-mapper behaving incorrectly. Open

priority:high

biocore/LabControl#553 · 4 comments · 2 assignees · Opened Jul 27, 2019
Copyright and authorship text might need updating Open

priority:low

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

biocore/LabControl#550 · Opened Jul 20, 2019
'Sequencing Runs' menu modified to support MiniPCR Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

biocore/LabControl#545 · Opened Jul 3, 2019
Prepare MiniPCR sequencing run Open

biocore/LabControl#544 · 1 assignee · Opened Jul 3, 2019
Support PCR Cleanup for MiniPCR workflow Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#543 · Opened Jul 3, 2019
Fork UI Dialog for Pooling Library Plates to support MiniPCR Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#542 · Opened Jul 3, 2019
Fork Pool Library Plates for MiniPCR Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#541 · Opened Jul 3, 2019
Modify menu item for Picogreen Quantification Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#540 · Opened Jul 3, 2019
Fork MiniPCR version of 'Prepare Amplicon Library' Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#539 · Opened Jul 3, 2019
Modify Compress gDNA plates to support MiniPCR Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

biocore/LabControl#538 · Opened Jul 3, 2019
Support creating the individual working primer plates in a primer set on different days Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

biocore/LabControl#535 · Opened Jun 7, 2019
Case sensitivity when copying and pasting Open

priority:high

biocore/LabControl#533 · 2 comments · 1 assignee · Opened Jun 6, 2019
Prepending study IDs when copying/pasting Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#532 · 1 comment · Opened Jun 6, 2019
Refactor to remove add_plate_modal_dialog.html and replace with use of addPlateModal.js's insertPlateModalDiv Open

code refactor

biocore/LabControl#531 · 1 assignee · Opened Jun 5, 2019
Adapter information needs to be recorded Open

priority:medium

Difficulty 4/5 3-5 days Newbie friendliness 30/100

biocore/LabControl#530 · Opened Jun 5, 2019
Unexpected cell behavior during plating Open

biocore/LabControl#520 · 1 comment · 3 assignees · Opened May 20, 2019
Studies associated with a plate disappear Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#519 · Opened May 20, 2019
Scrub codebase to harden well name (e.g. 'A1') generation/use code that cannot handle >26 rows Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

biocore/LabControl#518 · 1 comment · Opened May 10, 2019
Review underlaying commit behavior of sql_connection.py Open

biocore/LabControl#517 · 1 comment · 1 assignee · Opened May 10, 2019
Provide more explicit capture of error from PoolListHandler.get given unknown pool type? Open

biocore/LabControl#512 · 2 comments · 3 assignees · Opened May 9, 2019
Check to ensure samples that get a SequencingProcess._generate_sample_proj_value of None are NOT experimental? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

biocore/LabControl#511 · Opened May 9, 2019
PoolListHandler.get would identify pools from future new protocols as amplicon sequencing pools Open

biocore/LabControl#510 · 2 comments · 1 assignee · Opened May 9, 2019
Centralize and harden identification of pool component types Open

code refactor scope:medium

biocore/LabControl#509 · 1 comment · 1 assignee · Opened May 9, 2019
Output compression robot name in shotgun prep sheet? Open

enhancement priority:low question

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#508 · 1 comment · Opened May 9, 2019
Record platform of sequencer in database rather than hard-coding as "Illumina" Open

enhancement scope:medium

Difficulty 5/5 Over a week Newbie friendliness 30/100

biocore/LabControl#507 · Opened May 9, 2019
Support for Nextera and other library preparations Open

biocore/LabControl#503 · 5 comments · 1 assignee · Opened May 8, 2019
Sample ID to tube ID information Open

feature request front-end priority:low

Difficulty 4/5 3-5 days Newbie friendliness 38/100

biocore/LabControl#495 · 1 comment · Opened May 3, 2019
Verify correctness of LabControlObject's __hash__ and __eq__ methods Open

priority:low

Difficulty 4/5 3-5 days Newbie friendliness 25/100

biocore/LabControl#494 · 1 comment · Opened May 2, 2019
Unable to change contents of cell on sample plate Open

bug priority:high

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#490 · 2 comments · Opened Apr 29, 2019
Increasing the defensiveness of the add plate modal Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#486 · Opened Apr 25, 2019
Plate list page allows users to send unquantified compressed gdna plates to normalization page, which leads to error Open

bug priority:low

Difficulty 3/5 1-2 days Newbie friendliness 45/100

biocore/LabControl#485 · Opened Apr 24, 2019
Updating values for DNA conc in Prepare Sequencing Pool does not update calculations until field loses focus Open

priority:low

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#481 · 3 comments · Opened Apr 23, 2019
Should pool names be unique? Open

priority:high

biocore/LabControl#479 · 5 comments · 1 reaction · 1 assignee · Opened Apr 23, 2019
Pool amplicon libraries allows for 0 concentration triggering an exception Open

bug priority:high

Difficulty 3/5 1-2 days Newbie friendliness 42/100

biocore/LabControl#478 · Opened Apr 23, 2019
Viewing multiple plates locks up the webserver Open

bug priority:high

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#476 · 1 comment · Opened Apr 23, 2019
Exception when preparing an amplicon library with a 384 well plate Open

bug priority:high

Difficulty 3/5 1-2 days Newbie friendliness 45/100

biocore/LabControl#475 · Opened Apr 23, 2019

biocore/LabControl

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