Owner
bedapub
10 indexed repositories · View on GitHub
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besca
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
Python · 50 stars
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splicekit
splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
Python · 23 stars
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designit
Blocking and randomization for experimental design
HTML · 9 stars
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bescape
BESCApe is a cell deconvolution package.
HTML · 3 stars
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HBVouroboros
HBVouroboros automates sequencing-based HBV genotyping and expression profiling
Python · 3 stars
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sr-domain
Pipeline for extracting structured toxicology findings from preclinical study reports using LLMs with controlled generation. Converts PDF...
Python · 3 stars
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ribiosNGS
Next-generation sequencing data analysis with ribios
R · 2 stars
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ribiosGSEA
Functions for gene-set analysis of various kinds supported by ribios
R · 2 stars
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ribiosExpression
Data structure and functions for gene expression analysis
R · 0 stars
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ribiosAnnotation
Annotate features (genes, mRNAs, proteins, ...) with ribios
R · 0 stars
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tasks Open
bedapub/bescape#1 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/bescape#5 · 0 comments · 0 reactions · 0 assignees ·
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Dispersion plot Open
bedapub/splicekit#93 · 0 comments · 0 reactions · 1 assignee ·
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bedapub/splicekit#94 · 1 comment · 0 reactions · 1 assignee ·
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bedapub/splicekit#96 · 0 comments · 0 reactions · 1 assignee ·
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bedapub/splicekit#100 · 42 comments · 0 reactions · 0 assignees ·
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bedapub/splicekit#104 · 0 comments · 0 reactions · 1 assignee ·
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bedapub/ribiosAnnotation#6 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/ribiosAnnotation#7 · 3 comments · 0 reactions · 0 assignees ·
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Multimodal Data Openhelp wanted std workflow
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enhancement for future
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bug
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Documentation update Opendocumentation
bedapub/besca#135 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
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enhancement
bedapub/besca#160 · 0 comments · 0 reactions · 0 assignees ·
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documentation enhancement
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enhancement
bedapub/besca#171 · 0 comments · 0 reactions · 0 assignees ·
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documentation for future
bedapub/besca#177 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
bedapub/besca#180 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
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enhancement good first issue
bedapub/besca#188 · 0 comments · 0 reactions · 0 assignees ·
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bug
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bedapub/besca#272 · 0 comments · 0 reactions · 0 assignees ·
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env yaml file Open
bedapub/besca#298 · 2 comments · 0 reactions · 0 assignees ·
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bug
bedapub/besca#312 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#317 · 0 comments · 0 reactions · 0 assignees ·
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enhancement std workflow
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LFS quota exceeded Open
bedapub/besca#323 · 27 comments · 0 reactions · 0 assignees ·
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bedapub/besca#341 · 0 comments · 0 reactions · 0 assignees ·
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new 10x mtx version Open
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bedapub/besca#344 · 0 comments · 0 reactions · 0 assignees ·
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enhancement invalid
bedapub/besca#345 · 0 comments · 0 reactions · 0 assignees ·
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bug
bedapub/besca#346 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#363 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#367 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#369 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#381 · 2 comments · 0 reactions · 0 assignees ·
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bedapub/besca#384 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/besca#386 · 0 comments · 0 reactions · 0 assignees ·
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Extend constraints Openquestion
bedapub/designit#7 · 0 comments · 0 reactions · 0 assignees ·
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enhancement question
bedapub/designit#9 · 0 comments · 0 reactions · 0 assignees ·
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enhancement help wanted
bedapub/designit#10 · 0 comments · 0 reactions · 0 assignees ·
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enhancement help wanted
bedapub/designit#12 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/designit#15 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/designit#16 · 0 comments · 0 reactions · 1 assignee ·
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bedapub/designit#21 · 0 comments · 0 reactions · 0 assignees ·
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bedapub/designit#26 · 1 comment · 0 reactions · 0 assignees ·
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bedapub/designit#32 · 1 comment · 0 reactions · 2 assignees ·