bedapub / bedapub/bescape

tasks

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Dominant language
HTML
Stars
3
Forks
1
PR merge metrics
No merged PRs in 30d

Description

1. Fix singularity: getting singularity version of it to run (from the updated .sif file through singularity hub) error message
2. Include additional examples of deconv methods (e.g.EPIC)
3. Update documentation on https://bedapub.github.io/besca/tutorials/bescape.html and include an example for Bescape.deconvolute_gep( ) 

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reproducing the Singularity error with the updated .sif file from Singularity Hub, then inspect the tutorial at bedapub.github.io/besca/tutorials/bescape.html. Review how Bescape.deconvolute_gep() is documented and how deconvolution methods such as EPIC are presented. Done means the Singularity workflow works, additional examples are included, and the tutorial documents a Bescape.deconvolute_gep() example.

Written by the indexing model from the issue text.

Assessment

Tech stack
html, python
Domain
bioinformatics, documentation
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
28/100

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