WormBase/ACKnowledge

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Author Curation to Knowledgebases

Stars: 3
Forks: 1
Open beginner issues: 0
Indexed issues: 48

Dominant language: JavaScript
License: MIT
Last GitHub push: Aug 3, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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48 open issues indexed

Update the README file to specifically ask about contributing or collaborating Open

Difficulty 1/5 Under an hour Newbie friendliness 95/100

WormBase/ACKnowledge#423 · Opened May 4, 2026
generate pdf certificates for authors on the curator portal with number of completed submissions Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#411 · Opened Mar 23, 2026
Improve stats pages Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#410 · Opened Mar 23, 2026
Update the help text for alleles and phenotypes Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

WormBase/ACKnowledge#406 · Opened Feb 26, 2026
ACKnowledge transition to the Alliance Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#397 · Opened Jan 26, 2026
Add the latest Alliance paper as a reference in the About section of the submission form Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

WormBase/ACKnowledge#396 · Opened Jan 26, 2026
Update the help email address to an Alliance domain Open

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

WormBase/ACKnowledge#395 · Opened Jan 26, 2026
Review FAQs for January 2026 release Open

FAQs

WormBase/ACKnowledge#393 · 2 assignees · Opened Dec 16, 2025
notify curators (admins) when a submission contains data from google spreadsheets Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#391 · Opened Dec 15, 2025
Check email extraction for WBPaper00068409 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

WormBase/ACKnowledge#388 · Opened Oct 30, 2025
Species parentage validation Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#387 · Opened Oct 28, 2025
Save data if you change user Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

WormBase/ACKnowledge#386 · 1 comment · Opened Oct 6, 2025
Investigate whether we can fix the WBPersonundefined author for WBPaper00067461 Open

author attribution

Difficulty 4/5 3-5 days Newbie friendliness 30/100

WormBase/ACKnowledge#380 · Opened Sep 9, 2025
Parse Supplementary Table 1 from WBPaper00068221 for genes studied? Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

WormBase/ACKnowledge#378 · Opened Aug 28, 2025
Consider withholding papers from authors that only have species 'C. elegans' and no other entities extracted Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#374 · 1 comment · Opened Aug 19, 2025
create a script to upload genes from excel spreadsheets in afp_genestudied and pap_gene Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#373 · 1 comment · Opened Aug 18, 2025
Identify strategies to enforce ORCID usage Open

WormBase/ACKnowledge#369 · 3 assignees · Opened Jul 31, 2025
WormBase forms dependencies Open

alliance migration - curation forms

Difficulty 4/5 3-5 days Newbie friendliness 25/100

WormBase/ACKnowledge#362 · 1 comment · Opened Jul 31, 2025
Revise every mention of WormBase in the form Open

WormBase/ACKnowledge#359 · 1 assignee · Opened Jul 31, 2025
Compare TP and ABC NN for other datatypes Open

Alliance migration

WormBase/ACKnowledge#345 · 3 comments · 2 assignees · Opened Jun 30, 2025
Set up a report on the 25th of the month with the list of partial submissions Open

WormBase/ACKnowledge#334 · 1 comment · 1 assignee · Opened Feb 24, 2025
Implement APICURON badging Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

WormBase/ACKnowledge#329 · 1 comment · Opened Jan 30, 2025
Update functions to get list of papers without entities to consider sgd genes Open

SGD

Difficulty 4/5 3-5 days Newbie friendliness 25/100

WormBase/ACKnowledge#328 · Opened Jan 15, 2025
Add SGD gene name extraction to overall ACKnowledge pipeline Open

SGD

Difficulty 4/5 3-5 days Newbie friendliness 25/100

WormBase/ACKnowledge#327 · Opened Jan 13, 2025
Set up UI component to edit gene list for SGD Open

SGD

Difficulty 4/5 3-5 days Newbie friendliness 38/100

WormBase/ACKnowledge#325 · Opened Jan 13, 2025
Create UI to show genes extracted for multiple MODs Open

SGD

Difficulty 3/5 1-2 days Newbie friendliness 45/100

WormBase/ACKnowledge#324 · Opened Jan 13, 2025
Check email extraction from WBPaper00067261 Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

WormBase/ACKnowledge#316 · 1 comment · Opened Oct 25, 2024
Where do entities go Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#314 · Opened Oct 21, 2024
Reviewing sentences for Michael for RNAi, and physical and genetic interaction Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

WormBase/ACKnowledge#313 · Opened Oct 21, 2024
Fact extraction project Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#311 · Opened Oct 21, 2024
Test issue for test milestone Open

WormBase/ACKnowledge#310 · 1 assignee · Opened Oct 21, 2024
Evaluate a zebrafish paper for expression sentence level extraction Open

WormBase/ACKnowledge#300 · 1 assignee · Opened May 23, 2024
Improve Tutorials Open

WormBase/ACKnowledge#286 · 2 assignees · Opened Nov 30, 2023
Add additional genes for string matching (Zebrafish) Open

zebrafish

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#253 · 1 comment · Opened Jun 3, 2022
Add new section to form for adding comparator genome genes Open

curation_interface multispecies

WormBase/ACKnowledge#242 · 1 comment · 1 assignee · Opened Feb 21, 2022
Add a free text field to the dashboard to keep track of curatorial notes, including email communication with authors. Open

dashboard

Difficulty 3/5 1-2 days Newbie friendliness 30/100

WormBase/ACKnowledge#211 · 2 comments · Opened Aug 13, 2021
Add entities (e.g., genes) linked to another type of entities (e.g., alleles) extracted by the pipeline Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#202 · Opened May 28, 2021
Integrate predictions on transgenes, variations, strains Open

entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#185 · 1 comment · Opened Feb 26, 2021
Species related datatypes Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#171 · 1 comment · Opened Aug 24, 2020
Extract genes from all C. elegans papers with TFIDF=10 and save the results to pap_gene Open

ntt_extraction_pipelines

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#164 · 1 comment · Opened May 15, 2020
Add pie chart with number of added entities by journal Open

dashboard entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#150 · 2 comments · Opened Feb 20, 2020
Integrate curation status with author paper page Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#129 · Opened Sep 6, 2019
Community outreach Open

WormBase/ACKnowledge#122 · 4 comments · 2 assignees · Opened Aug 16, 2019
To discuss: present interconnected data in a single table Open

entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#121 · 2 comments · Opened Aug 16, 2019
remove 'yeast' from species aliases Open

ACKnowledge

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

WormBase/ACKnowledge#92 · 9 comments · Opened Jun 14, 2019
show a summary of the form to the author at the end of the submission process Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#110 · 1 comment · Opened Nov 2, 2018
simplified form for review articles Open

reviews

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#109 · 2 comments · Opened Oct 5, 2018
(for the future) ts, lf alleles Open

ntt_extraction_pipelines

WormBase/ACKnowledge#106 · 1 comment · 2 assignees · Opened Sep 5, 2018

WormBase/ACKnowledge

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