WormBase / WormBase/ACKnowledge
Consider withholding papers from authors that only have species 'C. elegans' and no other entities extracted
Nobody has claimed this yet.
- Dominant language
- JavaScript
- Stars
- 3
- Forks
- 1
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Description
To discuss:
Based on feedback from an author, would it be possible to withhold papers that only have C. elegans as a species and not other entities or data types?
We have some bioinformatics/software type papers that I include in our WB corpus, but those papers aren't a great fit for the ACKnowledge form and what we're asking for.
We can discuss possible approaches to this, e.g. a tag I'd add upon including the paper in the corpus or if something could be done post-processing.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by reviewing how papers enter the WB corpus and whether entity filtering occurs during inclusion or post-processing; the issue is done only after the team decides and implements a clear rule for papers containing only C. elegans.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- javascript
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100