Project-MONAI/MONAI

View on GitHub

AI Toolkit for Healthcare Imaging

Stars: 8.7k
Forks: 1.6k
Open beginner issues: 0
Indexed issues: 339
Avg merge: 5d 1h
Merged PRs (30d): 20

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue

Beginner friendly Everything

Open All

339 open issues indexed

Parent `Compose`'s `map_items` is passed down to a child `Compose` even though it specifies its own Open

enhancement Feature request

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAI#7565 · 1 comment · Opened Mar 22, 2024
Add _decorator_ keyword to Monai Bundle Configuration Open

enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7563 · 1 reaction · Opened Mar 20, 2024
Make dictionary transforms support different random parameters across keys Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 42/100

Project-MONAI/MONAI#7561 · 2 comments · Opened Mar 20, 2024
make BoxSelector exportable to ONNX Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7560 · Opened Mar 19, 2024
Precise Requirements Documentation Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/MONAI#7553 · 2 comments · Opened Mar 15, 2024
Fix seeds per default to global state Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7546 · Opened Mar 14, 2024
Creation of Github Teams Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#7544 · 3 comments · Opened Mar 13, 2024
Spacingd transform possibly resampling incorrectly Open

Project-MONAI/MONAI#7529 · 7 comments · 1 assignee · Opened Mar 11, 2024
Dataset for longitudinal imaging data Open

Design discussions Module: data

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7515 · 1 reaction · Opened Mar 4, 2024
Enhance bundle logging logic Open

Contribution wanted enhancement Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7513 · 4 comments · Opened Mar 4, 2024
Geometric transforms proposal Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#7486 · 4 comments · Opened Feb 22, 2024
Add U-Mamba to MONAI's network architectures Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7472 · Opened Feb 13, 2024
Unification of auto3dseg algorithm template format and MONAI bundle format Open

enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7467 · 1 comment · Opened Feb 13, 2024
TrainableBilateralFilter seems to not work with batch and channel dimensions (Duplicate of #7444) Open

duplicate

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/MONAI#7457 · Opened Feb 9, 2024
Blossom CI killed Open

bug CI/CD

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#7445 · 2 comments · Opened Feb 7, 2024
Reorganize files under tests folder Open

enhancement Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7438 · Opened Feb 5, 2024
port tcia-related code to tcia_utils Open

enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7417 · 1 comment · 1 reaction · Opened Jan 26, 2024
Monitoring system resources during training using MLFlow Open

Contribution wanted enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7405 · 1 comment · Opened Jan 19, 2024
Add WSIPatchDataset with sampling from masks Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 45/100

Project-MONAI/MONAI#7402 · 1 comment · 1 reaction · Opened Jan 18, 2024
`reverse_indexing` crashes for `ITKReader` when using `.nrrd` Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7372 · 2 comments · Opened Jan 6, 2024
Resolve the confusion about dimension order and orientation through their respective keyword arguments in `LoadImage` Open

Design discussions documentation need discussions

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7365 · 4 comments · 2 reactions · Opened Jan 4, 2024
Pickle Error Open

bug

Project-MONAI/MONAI#7362 · 2 comments · 1 assignee · Opened Jan 3, 2024
Self attention with relative positional embedding Open

enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7356 · Opened Jan 1, 2024
Transformer block local window attention Open

enhancement Feature request

Difficulty 4/5 3-5 days Newbie friendliness 45/100

Project-MONAI/MONAI#7349 · Opened Dec 30, 2023
Remove all absolute paths in the Auto3DSeg templates generation (BundleGen) process Open

enhancement Feature request

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#7340 · 1 comment · Opened Dec 26, 2023
Batch support for saliency maps Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 45/100

Project-MONAI/MONAI#7334 · 1 reaction · Opened Dec 20, 2023
Insufficient error message when interrupted in `DataAnalyzer` Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#7327 · Opened Dec 18, 2023
Save and load parameters of a pre-processing or augmentation (transforms) pipeline Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAI#7313 · 1 reaction · Opened Dec 12, 2023
Remove all absolute path in Auto3DSeg Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7248 · Opened Nov 20, 2023
Documentation about what parameters can be overrides in Auto3dSeg Open

documentation enhancement

Difficulty 3/5 1-2 days Newbie friendliness 48/100

Project-MONAI/MONAI#7240 · 8 comments · 1 reaction · Opened Nov 16, 2023
Create memory-friendly layers in MONAI to enable 3D large tensors Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#7209 · Opened Nov 7, 2023
Shape of class_weight in FocalLoss changed after saving checkpoint. Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAI#7207 · 2 comments · Opened Nov 7, 2023
add support of [skip ci] in PR titles for skipping the premerge pipelines Open

CI/CD Feature request

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#7195 · Opened Nov 3, 2023
Add a marching cube transform to get surface representations Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#7169 · 1 reaction · Opened Oct 27, 2023
`Lazy=True` ignored when using nested `Compose` Open

bug

Project-MONAI/MONAI#7146 · 6 comments · 1 assignee · Opened Oct 19, 2023
Make `apply_pending_transforms` optional in `execute_compose` Open

Feature request

Project-MONAI/MONAI#7139 · 10 comments · 1 assignee · Opened Oct 18, 2023
Datasets that cache in some form should be able to handle nested Compose Open

Design discussions enhancement

Project-MONAI/MONAI#7130 · 2 reactions · 1 assignee · Opened Oct 13, 2023
basic test with py3.12 Open

CI/CD

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAI#7096 · 1 comment · Opened Oct 6, 2023
pylint v3.0 false alarm Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAI#7094 · Opened Oct 6, 2023
making the bundle format validation tool generally available Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 45/100

Project-MONAI/MONAI#7067 · Opened Sep 29, 2023
Revisit "include_background" variable name in loss functions Open

Design discussions

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#7056 · 1 comment · Opened Sep 27, 2023
Make generate_spatial_bounding_box more general Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#7033 · Opened Sep 22, 2023
Make the Affine 32 Again Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAI#6961 · 2 comments · Opened Sep 8, 2023
Make Transforms smarter when device memory is not enough to fit in Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6916 · Opened Aug 30, 2023
optional include_background for the CE loss in DiceCELoss Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 38/100

Project-MONAI/MONAI#6855 · 1 comment · Opened Aug 10, 2023
use numpy random generator instead of randomstate Open

Feature request

Project-MONAI/MONAI#6854 · 16 comments · 1 reaction · 2 assignees · Opened Aug 10, 2023
Lazy resampling does not get the `mode` and `padding_mode` from the pending transforms properly Open

Feature request

Project-MONAI/MONAI#6850 · 2 comments · 1 assignee · Opened Aug 10, 2023
Following NEP 29 Open

Feature request

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/MONAI#6843 · 4 comments · Opened Aug 8, 2023
Add TensorRT conversion support for diffusion unet and hovernet Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 38/100

Project-MONAI/MONAI#6838 · 1 comment · Opened Aug 8, 2023
spatial transforms won't apply in Lazy mode Open

Contribution wanted documentation enhancement

Project-MONAI/MONAI#6779 · 3 comments · 1 assignee · Opened Jul 26, 2023

Project-MONAI/MONAI

Get new issues in your inbox