Project-MONAI/MONAI

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AI Toolkit for Healthcare Imaging

Stars: 8.7k
Forks: 1.6k
Open beginner issues: 0
Indexed issues: 339
Avg merge: 5d 1h
Merged PRs (30d): 20

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue

Beginner friendly Everything

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339 open issues indexed

PersistentDataset and CacheDataset hybrid Open

Contribution wanted enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAI#6753 · 3 comments · Opened Jul 21, 2023
Update MONAI Label to use new bundle workflow. Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAI#6720 · 2 comments · Opened Jul 14, 2023
Lazy DivisiblePadd converts uint8 to float32 Open

Contribution wanted Feature request

Project-MONAI/MONAI#6713 · 4 comments · 1 assignee · Opened Jul 13, 2023
Add random sorting option to GridPatch and RandGridPatch Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#6699 · 1 comment · Opened Jul 6, 2023
Test error: Distributed call failed in min-dep-os Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6696 · 3 comments · 1 reaction · Opened Jul 4, 2023
Add dataset hub. Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#6646 · 2 comments · Opened Jun 22, 2023
SlidingWindowInferer runtime increase if sw_batch_size is too big Open

community need discussions

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6628 · 7 comments · Opened Jun 19, 2023
LazyTrait and apply_transform API issue Open

bug

Project-MONAI/MONAI#6597 · 2 comments · 1 reaction · 1 assignee · Opened Jun 9, 2023
Meta_dict and lazy resampling in apply transform Open

bug

Project-MONAI/MONAI#6595 · 24 comments · 1 assignee · Opened Jun 9, 2023
Patch dataset seems extremely inefficient in training Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6585 · 2 comments · 1 reaction · Opened Jun 6, 2023
Support TensorRT export with dynamo Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6577 · 2 reactions · Opened Jun 4, 2023
RandAffine translate_range parameter should be relative. Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6558 · 1 comment · Opened May 29, 2023
Documentation index is not functioning well Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#6557 · 4 comments · Opened May 29, 2023
convert SlidingWindowInferer such that can be exportable to ONNX Open

Contribution wanted Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6526 · 6 comments · 2 reactions · Opened May 17, 2023
Define constant for Affine Transform Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#6506 · 1 comment · 2 reactions · Opened May 10, 2023
Resolve remaining design questions for PR #6257 Open

Design discussions

Project-MONAI/MONAI#6504 · 2 comments · 1 assignee · Opened May 10, 2023
multiprocessing metatensor efficiency? Open

Contribution wanted enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6472 · Opened May 5, 2023
DynUNet crashes with DataParallel and DeepSupervision Open

bug

Project-MONAI/MONAI#6442 · 15 comments · 1 assignee · Opened Apr 27, 2023
Lazy resampling: MetaTensor.applied_operations ends up out of order Open

Design discussions

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAI#6439 · 8 comments · Opened Apr 27, 2023
Memory efficient sliding window inference Open

enhancement Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6427 · 6 comments · 1 reaction · Opened Apr 25, 2023
MeanEnsemble to accumulate results in-place Open

Feature request

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/MONAI#6366 · 1 comment · Opened Apr 14, 2023
Segment Anything from META: Network implementation. Has someone started already? Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6357 · 7 comments · 9 reactions · Opened Apr 13, 2023
DataLoader's collate_fn does not work with Compose transforms Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#6279 · 1 comment · Opened Apr 3, 2023
Support for `ImageReader` in `SlidingWindowSplitter` Open

enhancement Feature request

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAI#6225 · Opened Mar 22, 2023
Add dynamic segmentor and controller Open

Feature request

Project-MONAI/MONAI#6178 · 1 assignee · Opened Mar 20, 2023
WSIReader mirror flip inference map Open

Pathology/Microscopy

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#6173 · 5 comments · Opened Mar 18, 2023
ResourceWarning: Implicitly cleaning up Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#6167 · 2 comments · 1 reaction · Opened Mar 17, 2023
`GridPatch` with `pin_memory=True` significant slow-down in following epochs Open

bug Contribution wanted

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6082 · 4 comments · Opened Feb 28, 2023
TensorBoardImageHandler for multiple branches Open

Contribution wanted enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6081 · 2 comments · Opened Feb 28, 2023
Make Dints TensorRT Convertable Open

Feature request

Project-MONAI/MONAI#6079 · 5 comments · 1 assignee · Opened Feb 28, 2023
Use a different unit rather than 'level' for pathology image resolution Open

Feature request Pathology/Microscopy

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6064 · 3 comments · Opened Feb 24, 2023
Affine transformation order in AffineGrid wrong? Open

community Contribution wanted need discussions

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6062 · 5 comments · 1 reaction · Opened Feb 24, 2023
gradient-based saliency maps to support different activations Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#6057 · 1 reaction · Opened Feb 23, 2023
Integrate AzureML functionality into Auto3dSeg Open

Contribution wanted Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#6054 · 2 comments · 2 reactions · Opened Feb 23, 2023
Improve HoVerNet postprocessing performance Open

enhancement Pathology/Microscopy

Difficulty 5/5 Over a week Newbie friendliness 28/100

Project-MONAI/MONAI#6046 · 12 comments · Opened Feb 22, 2023
An optimized solution to run HoverNet on patholgy WSI Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAI#5989 · 12 comments · Opened Feb 13, 2023
need commercial friendly pre-trained weights for endoscopic_tool_segmentation bundle and example Open

Bundles

Project-MONAI/MONAI#5985 · 2 assignees · Opened Feb 13, 2023
Implement Feature Extraction Transforms Open

Feature request

Project-MONAI/MONAI#5947 · 3 comments · 1 assignee · Opened Feb 7, 2023
in-memory object readers/writers Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#5918 · 2 reactions · Opened Jan 31, 2023
Semantic-Aware Image Augmentation Strategy Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#5913 · 1 reaction · Opened Jan 30, 2023
data analyzer set_grad_enabled Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAI#5889 · 1 comment · Opened Jan 23, 2023
Implement an Gaussian Merger Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#5874 · 4 comments · Opened Jan 18, 2023
Implement a min/max Merger for overlapping patches Open

Feature request

Project-MONAI/MONAI#5873 · 1 assignee · Opened Jan 18, 2023
review setuptool version requirement (pkg_resources.extern.packaging.version.InvalidVersion) Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#5859 · Opened Jan 16, 2023
runtests.sh does not work on Windows Open

bug Contribution wanted

Difficulty 3/5 1-2 days Newbie friendliness 38/100

Project-MONAI/MONAI#5857 · 1 comment · 1 reaction · Opened Jan 16, 2023
auto3dseg -- training/ensembling deterministic behaviour Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#5830 · 1 comment · Opened Jan 9, 2023
Define python level abstraction for a Bundle Open

Feature request

Project-MONAI/MONAI#5821 · 9 comments · 4 reactions · 3 assignees · Opened Jan 6, 2023
HEDJitter Transform Open

Feature request Pathology/Microscopy

Project-MONAI/MONAI#5809 · 12 comments · 2 reactions · 1 assignee · Opened Jan 5, 2023
[Feature Request]: CLIP Driven Universal Model Open

Contribution wanted Design discussions Feature request

Project-MONAI/MONAI#5800 · 2 comments · 4 reactions · 2 assignees · Opened Jan 3, 2023
Gradients of the existing bilateral filter layers (normal and PHL) Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 48/100

Project-MONAI/MONAI#5772 · 2 comments · 1 reaction · Opened Dec 19, 2022

Project-MONAI/MONAI

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