Project-MONAI/MONAI

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AI Toolkit for Healthcare Imaging

Stars: 8.7k
Forks: 1.6k
Open beginner issues: 0
Indexed issues: 339
Avg merge: 5d 1h
Merged PRs (30d): 20

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue

Beginner friendly Everything

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339 open issues indexed

Auto3D refactor code generation for each network architecture Open

question

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAI#5748 · 2 comments · Opened Dec 14, 2022
Auto3d Caches data depending on number of gpus. Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 38/100

Project-MONAI/MONAI#5745 · 2 comments · Opened Dec 14, 2022
track sub and div and compute the NormalizeIntensity inverse Open

Contribution wanted Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#5647 · 7 comments · 1 reaction · Opened Dec 5, 2022
unit test errors with GPU that enables tf32 Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#5577 · 1 comment · 1 reaction · Opened Nov 24, 2022
CLI command for inspecting checkpoints Open

Contribution wanted Feature request

Difficulty 3/5 1-2 days Newbie friendliness 58/100

Project-MONAI/MONAI#5537 · 1 comment · Opened Nov 17, 2022
Enhance MeanDice metric Open

enhancement

Project-MONAI/MONAI#5493 · 3 comments · 1 assignee · Opened Nov 9, 2022
Low GPU utilization (<40%) with spleen bundle Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#5454 · 1 comment · Opened Nov 2, 2022
security.md to define how users should report security issues for this repo Open

Feature request

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAI#5419 · Opened Oct 27, 2022
Standardize the way of getting model weights from Trainer Open

Feedback welcomed

Project-MONAI/MONAI#5371 · 11 comments · 1 reaction · 5 assignees · Opened Oct 20, 2022
refactoring the cache-based datasets Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#5366 · 5 comments · Opened Oct 20, 2022
Add DetectionInferer to simplify the 3D detection pipeline Open

Feature request

Project-MONAI/MONAI#5324 · 1 comment · 1 assignee · Opened Oct 13, 2022
Integration test for pathology pipelines Open

Pathology/Microscopy

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAI#5311 · 4 comments · Opened Oct 11, 2022
Implement a WSI-based active learning algorithm for pathology Open

Pathology/Microscopy

Difficulty 5/5 Over a week Newbie friendliness 15/100

Project-MONAI/MONAI#5290 · Opened Oct 7, 2022
Implement a patch-based active learning algorithm for pathology Open

Pathology/Microscopy

Project-MONAI/MONAI#5289 · 1 comment · 1 assignee · Opened Oct 7, 2022
MetaTensor and DistributedDataParallel. bug (SyncBatchNormBackward is a view and is being modified inplace) Open

bug

Project-MONAI/MONAI#5283 · 4 comments · 2 assignees · Opened Oct 7, 2022
PHL filtering with more than 16 channels Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#5279 · Opened Oct 6, 2022
Include ObjectID for create_test_image_2d Open

Contribution wanted Feature request

Difficulty 3/5 1-2 days Newbie friendliness 55/100

Project-MONAI/MONAI#5267 · 9 comments · Opened Oct 5, 2022
Aleatoric and Epistemic Uncertainty Engine Open

Contribution wanted Feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAI#5207 · 3 comments · Opened Sep 24, 2022
Issue with distributed `SyncBatchNorm` in MIL pipeline Open

bug Pathology/Microscopy

Difficulty 4/5 3-5 days Newbie friendliness 30/100

Project-MONAI/MONAI#5198 · 11 comments · Opened Sep 22, 2022
data analyzer to automatically detect 'outliners' Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#5168 · 3 comments · 1 reaction · Opened Sep 16, 2022
Consolidated Resampling Open

Feature request Module: transform refactor

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#5010 · Opened Aug 26, 2022
`WSIReader` support for caching with cuCIM backend Open

Pathology/Microscopy

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#4981 · Opened Aug 23, 2022
Consolidation of spatial transform parameters Open

Feature request Module: transform

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#4974 · 13 comments · Opened Aug 23, 2022
No source for code: '/__w/MONAI/MONAI/config-3.8.py'. Open

bug CI/CD

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAI#4917 · 1 comment · Opened Aug 16, 2022
Develop experiment management module Open

Feature request

Project-MONAI/MONAI#4903 · 5 comments · 2 assignees · Opened Aug 12, 2022
Pathology HoVerNet: Evaluate the model on WSI and calculate WSI metrics Open

Pathology/Microscopy tutorials

Project-MONAI/MONAI#4885 · 1 assignee · Opened Aug 9, 2022
Pathology HoVerNet: Build the WSI inference pipeline Open

Pathology/Microscopy tutorials

Difficulty 5/5 Over a week Newbie friendliness 10/100

Project-MONAI/MONAI#4883 · 1 comment · Opened Aug 9, 2022
Rename `Transpose` to `Permute` to Reflect Behaviour Open

Feedback welcomed need discussions

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#4863 · 3 comments · 1 reaction · Opened Aug 8, 2022
Lazy Resampling Open

Feature request

Project-MONAI/MONAI#4855 · 5 comments · 3 reactions · 2 assignees · Opened Aug 8, 2022
Add Monai working group into to the contributing.md guide Open

Feature request

Difficulty 1/5 Under an hour Newbie friendliness 45/100

Project-MONAI/MONAI#4816 · Opened Aug 2, 2022
Add ConvNeXt model architecture Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#4798 · 7 comments · Opened Jul 29, 2022
`monai.visualize.matshow3d` for metatensor Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#4788 · 1 comment · Opened Jul 28, 2022
Add support for 3D/2D mobile net Open

Contribution wanted Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#5057 · Opened Jul 15, 2022
built-in option of `FromMetaTensor` in LoadImage? Open

Feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAI#4700 · Opened Jul 14, 2022
Random cropping with scaling option for super-resolution data augmentation Open

Contribution wanted Feature request

Difficulty 4/5 3-5 days Newbie friendliness 42/100

Project-MONAI/MONAI#4624 · 5 comments · 1 reaction · Opened Jul 1, 2022
profiling the image reader/writer Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#4622 · 1 comment · 1 reaction · Opened Jul 1, 2022
Compose deformation vector fields (DVFs) Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#4604 · 5 comments · Opened Jun 28, 2022
refactor unet blocks to use the more recent layer api Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#4593 · Opened Jun 27, 2022
Enable setting of training iteration in Trainers Open

Feature request

Project-MONAI/MONAI#4564 · 6 comments · 4 assignees · Opened Jun 22, 2022
Implementation of the positive likelihood ratio (LR+) Open

Feature request Module: metrics WG: Evaluation

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAI#4422 · Opened Jun 1, 2022
Implementation of the centre line Dice score / topology precision / topology sensitivity Open

Feature request Module: metrics WG: Evaluation

Difficulty 4/5 3-5 days Newbie friendliness 42/100

Project-MONAI/MONAI#4421 · Opened Jun 1, 2022
Identification of relevant thresholds for binarisation Open

Feature request Module: metrics WG: Evaluation

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#4391 · Opened May 30, 2022
MONAI Dataset objects incompatible with `torch.utils.data.BatchSampler` Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 38/100

Project-MONAI/MONAI#4372 · Opened May 27, 2022
Implementation of boundary-aware shape loss Open

Feature request

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAI#4204 · 2 reactions · Opened Apr 29, 2022
"copy-paste augmentation" Open

Feature request Module: transform

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAI#4201 · 1 comment · 2 reactions · Opened Apr 29, 2022
Image Generation for Pathology Transforms Open

Pathology/Microscopy

Project-MONAI/MONAI#4161 · 1 comment · 2 assignees · Opened Apr 22, 2022
developer's guide for network architectures Open

documentation Feature request

Project-MONAI/MONAI#4111 · 2 comments · 1 assignee · Opened Apr 12, 2022
Whole slide dataset to extract random patches Open

Pathology/Microscopy

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#4099 · 2 comments · 2 reactions · Opened Apr 10, 2022
Add the boundary enhancement loss implementation for 2D/3D medical image segmentation Open

enhancement Feature request

Project-MONAI/MONAI#4068 · 1 assignee · Opened Apr 4, 2022
Add tutorials for the T-AutoML model searching/training/validation Open

Feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAI#4067 · Opened Apr 4, 2022

Project-MONAI/MONAI

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