Project-MONAI / Project-MONAI/MONAI

track sub and div and compute the NormalizeIntensity inverse

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#5,647 7 comments 1 reaction 0 assignees View on GitHub

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Contribution wanted Feature request
Dominant language
Python
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Description

Discussed in https://github.com/Project-MONAI/MONAI/discussions/5645

Originally posted by sh3rlock14 December 5, 2022
When applying the NormalizeIntensity transform (w/o passing subtrahend and divisor), the computed _sub and _div should be added to the meta information. This would be helpful in getting back the original intensity values: not only this could be useful for recon. problems, but also for logging.

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First steps

  1. Read the whole issue, then the project's contributing guide.
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  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the NormalizeIntensity transform and its metadata handling, then review discussion 5645 for the surrounding context. The work is done when automatically computed subtrahend and divisor values are recorded in metadata and can support recovering the original intensity values.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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