Project-MONAI / Project-MONAI/MONAI

Remove all absolute paths in the Auto3DSeg templates generation (BundleGen) process

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#7,340 1 comment 0 reactions 0 assignees View on GitHub

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enhancement Feature request
Dominant language
Python
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Avg merge
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Merged PRs (30d)
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Description

Describe the bug

The absolute paths in the Auto3DSeg BundleGen are blocking users to customize and use bundles locally.

To Reproduce
Steps to reproduce the behavior:

  1. Go to '...'
  2. Install '....'
  3. Run commands '....'

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
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Environment

Ensuring you use the relevant python executable, please paste the output of:

python -c "import monai; monai.config.print_debug_info()"

Additional context
Add any other context about the problem here.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue names no files, tests, or concrete reproduction steps. Start by locating the Auto3DSeg BundleGen template-generation entry points, then trace where paths are written; done means generated templates contain no absolute paths and can be customized and used locally.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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