Project-MONAI / Project-MONAI/MONAI
Remove all absolute path in Auto3DSeg
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- Dominant language
- Python
- Stars
- 8.7k
- Forks
- 1.6k
- Avg merge
- 5d 1h
- Merged PRs (30d)
- 20
Description
Describe the bug
Auto3DSeg will record paths in the bundle templates after training.
This makes the bundle difficult to use for inference, when the bundle files are moved from one system to another.
The goal is to remove all the absolute path generation/resolving in the Auto3DSeg module, particularly, BundleGen
Expected behavior
Exported bundles can be used as it is.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in the Auto3DSeg module, particularly BundleGen, and trace where paths are generated or resolved during bundle creation after training. Reproduce the issue by exporting a bundle, moving its files to another system or location, and checking whether it remains usable for inference. Done means exported bundles contain no unusable absolute paths and work as-is after being moved.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100