MetaCell / MetaCell/NetPyNE-UI

Experiment manager breaks 3D view

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#714 1 comment 0 reactions 0 assignees View on GitHub
Dominant language
JavaScript
Stars
23
Forks
10
PR merge metrics
No merged PRs in 30d

Description

To reproduce:
- Load tutorial 1, e.g. on OSB
- View default network in 3D, e.g.
![Screenshot from 2023-04-18 16-20-50](https://user-images.githubusercontent.com/1556687/232824525-ef93487f-cd90-4b32-9760-fb3f1265f667.png)

- Add an experiment, e.g. iterating over the number of cells:
![Screenshot from 2023-04-18 16-22-23](https://user-images.githubusercontent.com/1556687/232824914-4d647a25-b116-49fc-aa20-7dc9d45cd098.png)

- Run the experiment
- Load one of the trials, e.g. 3 cells
- View in 3D:
![Screenshot from 2023-04-18 16-23-19](https://user-images.githubusercontent.com/1556687/232825140-322a55b2-97cf-42ba-adb9-e12a142479e3.png)

- So correct number of cells, but morphology squashed. Same happenned with other experiments changing other parameters

Any sign of this before @ddelpiano @salvadord?

Contributor guide

No contributing guide indexed for this repository

Research direction

Reproduce the issue with tutorial 1 by viewing the default network in 3D, running an experiment that changes the number of cells, and opening a trial such as 3 cells. Start by tracing the experiment manager into the 3D view and compare the trial geometry with the default view. Done means experiment trials display the correct cell count without squashed morphology.

Written by the indexing model from the issue text.

Assessment

Tech stack
javascript
Domain
frontend
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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