ImperialCollegeLondon

ImperialCollegeLondon/virtual_ecosystem

This repository is the home for the codebase for the Virtual Ecosystem project.

Stars: 20
Forks: 5
Open beginner issues: 0
Indexed issues: 173
Avg merge: 2d 1h
Merged PRs (30d): 34

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 17, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Open All

171 open issues indexed

Module specific logging Open

enhancement

ImperialCollegeLondon/virtual_ecosystem#95 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Use logger error codes better Open

bug

ImperialCollegeLondon/virtual_ecosystem#113 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Approach to logging and error handling Open

ImperialCollegeLondon/virtual_ecosystem#160 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Change global `pytest` logging level to `INFO` Open

ImperialCollegeLondon/virtual_ecosystem#190 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Clarify roles and structure of Grid, Core and Data objects and use in models and axis validation. Open

ImperialCollegeLondon/virtual_ecosystem#208 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Keep an eye on `myst-parser` and `myst-nb` updates Open

documentation

ImperialCollegeLondon/virtual_ecosystem#238 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Tackling relative paths in config files. Open

enhancement

ImperialCollegeLondon/virtual_ecosystem#273 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Consistent treatment of energy across models Open

ImperialCollegeLondon/virtual_ecosystem#288 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Can't get `sphinx.autodoc` to work sensibly for registries Open

ImperialCollegeLondon/virtual_ecosystem#301 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Aligning functional group loading methods Open

ImperialCollegeLondon/virtual_ecosystem#305 · 0 comments · 1 reaction · 2 assignees · Indexed Sep 17, 2026
Switch away from `pint` time units Open

bug

ImperialCollegeLondon/virtual_ecosystem#307 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Review logging output Open

ImperialCollegeLondon/virtual_ecosystem#316 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Fix circular import problem with typing ModuleInfo Open

bug

ImperialCollegeLondon/virtual_ecosystem#328 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
simplify calculate_soil_carbon_updates() function Open

ImperialCollegeLondon/virtual_ecosystem#344 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Default temperature units should be Kelvin rather than Celsius Open

ImperialCollegeLondon/virtual_ecosystem#346 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Resolving constants milestone issues and constants bundling. Open

ImperialCollegeLondon/virtual_ecosystem#364 · 5 comments · 0 reactions · 2 assignees · Indexed Sep 17, 2026
Look at creating `Config` directly from dictionaries. Open

ImperialCollegeLondon/virtual_ecosystem#367 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Move `Grid` instance from `Data` into `CoreComponents` Open

ImperialCollegeLondon/virtual_ecosystem#376 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add verbosity control to `ve_run_cli` Open

ImperialCollegeLondon/virtual_ecosystem#413 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Refine and optimize the Madingley foraging system Open

ImperialCollegeLondon/virtual_ecosystem#416 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Logging in `BaseModel.from_config` methods. Open

bug

ImperialCollegeLondon/virtual_ecosystem#436 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add statistics to abiotic variables Open

ImperialCollegeLondon/virtual_ecosystem#437 · 1 comment · 1 reaction · 1 assignee · Indexed Sep 17, 2026
Core variables Open

ImperialCollegeLondon/virtual_ecosystem#442 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Animal function name updating. Open

ImperialCollegeLondon/virtual_ecosystem#462 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - Rework defecate's use of conversion efficiency Open

ImperialCollegeLondon/virtual_ecosystem#463 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - non-reproductive reproductive mass Open

ImperialCollegeLondon/virtual_ecosystem#466 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - diagonal migration Open

ImperialCollegeLondon/virtual_ecosystem#467 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - review maximum mass logic Open

ImperialCollegeLondon/virtual_ecosystem#468 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - allometric migrate distances Open

ImperialCollegeLondon/virtual_ecosystem#471 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - excess reproductive mass Open

ImperialCollegeLondon/virtual_ecosystem#472 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animal - review the logic of birth mass for indirect developers Open

ImperialCollegeLondon/virtual_ecosystem#473 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Align core model schema variable names to LayerStructure names Open

ImperialCollegeLondon/virtual_ecosystem#480 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Abiotic simple - conservation of energy with bounds setting Open

ImperialCollegeLondon/virtual_ecosystem#483 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Hydrology - set boundaries for river flow Open

ImperialCollegeLondon/virtual_ecosystem#486 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Hydrology - update infiltration Open

ImperialCollegeLondon/virtual_ecosystem#494 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Replace daily lists in HydrologyModel with array implementation Open

ImperialCollegeLondon/virtual_ecosystem#517 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Create skinny topsoil layer for calculation of temperature and matric potentail at depth of microbial activity Open

ImperialCollegeLondon/virtual_ecosystem#535 · 6 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Animal - Reexamine foraging indexing Open

ImperialCollegeLondon/virtual_ecosystem#547 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Animals are not 100% carbon Open

ImperialCollegeLondon/virtual_ecosystem#561 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Implement model spin-up Open

enhancement

ImperialCollegeLondon/virtual_ecosystem#581 · 8 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Handle large datasets efficienlty Open

enhancement

ImperialCollegeLondon/virtual_ecosystem#582 · 16 comments · 0 reactions · 2 assignees · Indexed Sep 17, 2026
Graph representation of configs in `ve_run.toml` Open

ImperialCollegeLondon/virtual_ecosystem#648 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Function to generate data / folder structure from a template Open

ImperialCollegeLondon/virtual_ecosystem#649 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Link to `snakemake` in the docs Open

ImperialCollegeLondon/virtual_ecosystem#675 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Add constant value setting for data elements in configuration. Open

ImperialCollegeLondon/virtual_ecosystem#677 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Keep an eye on `pyrealm.demograpy.canopy` attributes Open

ImperialCollegeLondon/virtual_ecosystem#695 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Rename `set_filled_canopy` to `set_active_canopy` and related Open

ImperialCollegeLondon/virtual_ecosystem#696 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Soil-abiotic links review Open

ImperialCollegeLondon/virtual_ecosystem#699 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 17, 2026
Check model variable setups in tests Open

ImperialCollegeLondon/virtual_ecosystem#713 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Test config path resolution across Windows drives. Open

ImperialCollegeLondon/virtual_ecosystem#720 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026

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