DeepGraphLearning / DeepGraphLearning/PerturbDiff
Inference
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- Dominant language
- Python
- Stars
- 63
- Forks
- 10
- PR merge metrics
- No merged PRs in 30d
Description
Thanks for the work!
How can I use your model finetuned on tahoe for instance to predict the gene expression matrix of cells perturbed by a drug given my own gene expression matrix of control cells? That would a very useful notebook to have :).
Raf
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the model finetuned on Tahoe and any existing inference entry point, then inspect how control gene-expression matrices and drug perturbations are represented. Define a notebook that accepts a user's control matrix, applies the model, and demonstrates prediction of the perturbed-cell expression matrix.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 45/100