Owner
AllenCell
20 indexed repositories · View on GitHub
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vole-core
core rendering canvas and data loading services for Vol-E volume viewer
TypeScript · 106 stars
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agave
High quality visualization for volumetric image data
C++ · 62 stars
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Python · 32 stars
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Python · 32 stars
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aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
Jupyter Notebook · 26 stars
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cvapipe_analysis
Analysis of data produced by cvapipe for the variance paper
Jupyter Notebook · 24 stars
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Python · 24 stars
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napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Python · 20 stars
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segmenter_model_zoo
scripts and API for running Deep Learning models from segmenter
Jupyter Notebook · 10 stars
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Python · 7 stars
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benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
Python · 7 stars
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allencell-segmenter-ml
Napari plugin for ml segmentation
Python · 5 stars
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endothelial-pipeline
Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states
Python · 2 stars
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cell-feature-explorer
Plot and explore data that is linked to images, with an embedded viewer
TypeScript · 2 stars
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EMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.
Python · 1 star
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Python · 0 stars
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camera-alignment-core
Core algorithms for alignment of two-camera microscopy imagery
Python · 0 stars
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cellpack-client
Frontend interface for cellPACK
TypeScript · 0 stars
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cell-catalog
Cell catalog 2.0
TypeScript · 0 stars
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TypeScript · 0 stars
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Toggle histograms OpenComputational Requests enhancement
AllenCell/cell-feature-explorer#245 · 1 comment · 0 reactions · 0 assignees ·
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Computational Requests enhancement
AllenCell/cell-feature-explorer#247 · 0 comments · 0 reactions · 0 assignees ·
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Computational Requests question
AllenCell/cell-feature-explorer#251 · 1 comment · 0 reactions · 0 assignees ·
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Computational Requests enhancement
AllenCell/cell-feature-explorer#252 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-feature-explorer#253 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-feature-explorer#268 · 0 comments · 1 reaction · 0 assignees ·
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bug
AllenCell/cell-feature-explorer#270 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/cell-feature-explorer#273 · 0 comments · 0 reactions · 0 assignees ·
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Annotation tools Openenhancement question
AllenCell/cell-feature-explorer#275 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/cell-feature-explorer#276 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/cell-feature-explorer#277 · 1 comment · 0 reactions · 0 assignees ·
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bug Tech debt
AllenCell/cell-feature-explorer#281 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/cell-feature-explorer#289 · 0 comments · 0 reactions · 0 assignees ·
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bug
AllenCell/cell-feature-explorer#298 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/cell-feature-explorer#299 · 0 comments · 1 reaction · 0 assignees ·
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bug
AllenCell/cell-feature-explorer#304 · 0 comments · 0 reactions · 0 assignees ·
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bug enhancement
AllenCell/cell-feature-explorer#305 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-feature-explorer#306 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-catalog#26 · 1 comment · 0 reactions · 1 assignee ·
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Tutorial page Open
AllenCell/cell-catalog#29 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/cell-catalog#88 · 1 comment · 0 reactions · 1 assignee ·
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blocked
AllenCell/cell-catalog#113 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/cell-catalog#139 · 1 comment · 0 reactions · 0 assignees ·
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Hover interaction Open
AllenCell/cell-catalog#168 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-catalog#203 · 1 comment · 0 reactions · 0 assignees ·
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AllenCell/cell-catalog#256 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-catalog#291 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/cell-catalog#332 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/cell-catalog#413 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/idea-board#9 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/idea-board#10 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/idea-board#30 · 0 comments · 0 reactions · 2 assignees ·
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AllenCell/idea-board#31 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/idea-board#43 · 1 comment · 0 reactions · 0 assignees ·
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AllenCell/idea-board#62 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/idea-board#63 · 1 comment · 0 reactions · 0 assignees ·
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AllenCell/idea-board#97 · 0 comments · 0 reactions · 1 assignee ·
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bug
AllenCell/idea-board#110 · 2 comments · 0 reactions · 1 assignee ·
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test Openbug
AllenCell/idea-board#117 · 0 comments · 0 reactions · 0 assignees ·
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new resource types Open
AllenCell/idea-board#119 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/idea-board#121 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/idea-board#122 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/idea-board#123 · 0 comments · 0 reactions · 1 assignee ·
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milestone candidate ux
AllenCell/vole-core#60 · 4 comments · 0 reactions · 1 assignee ·
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AllenCell/vole-core#63 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/vole-core#67 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/vole-core#75 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/vole-core#86 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#40 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#42 · 0 comments · 0 reactions · 0 assignees ·