AlexsLemonade/refinebio
View on GitHubRefine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
- Stars
- 135
- Forks
- 21
- Open beginner issues
- 0
- Indexed issues
- 495
- Dominant language
- Python
- License
- No license data
- Last GitHub push
- Jul 3, 2026
- Latest indexed
- Sep 14, 2026
- Contributing guide
- No contributing guide
- Code of conduct
- No code of conduct
- Beginner labels
- No beginner labels indexed
- PR merge metrics
- No merged PRs in 30d
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backlog
AlexsLemonade/refinebio#78 · 0 comments · 0 reactions · 0 assignees ·
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backlog optimization RNA-seq
AlexsLemonade/refinebio#79 · 0 comments · 0 reactions · 0 assignees ·
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backlog processor RNA-seq
AlexsLemonade/refinebio#84 · 1 comment · 0 reactions · 0 assignees ·
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agilent backlog exploration SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#87 · 7 comments · 0 reactions · 0 assignees ·
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backlog SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#88 · 0 comments · 0 reactions · 0 assignees ·
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agilent backlog
AlexsLemonade/refinebio#89 · 22 comments · 0 reactions · 0 assignees ·
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backlog documentation SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#97 · 6 comments · 0 reactions · 1 assignee ·
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backlog
AlexsLemonade/refinebio#102 · 0 comments · 0 reactions · 0 assignees ·
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backlog database exploration future thoughts
AlexsLemonade/refinebio#113 · 5 comments · 0 reactions · 0 assignees ·
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backlog enhancement
AlexsLemonade/refinebio#118 · 1 comment · 0 reactions · 0 assignees ·
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backlog concept design
AlexsLemonade/refinebio#124 · 0 comments · 0 reactions · 1 assignee ·
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backlog design frontend low-fi prototype
AlexsLemonade/refinebio#125 · 0 comments · 0 reactions · 1 assignee ·
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agilent backlog exploration SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#138 · 2 comments · 0 reactions · 0 assignees ·
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backlog exploration SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#144 · 1 comment · 0 reactions · 0 assignees ·
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api backlog database frontend
AlexsLemonade/refinebio#169 · 2 comments · 0 reactions · 0 assignees ·
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backlog quality control
AlexsLemonade/refinebio#202 · 0 comments · 0 reactions · 1 assignee ·
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question salmon
AlexsLemonade/refinebio#209 · 19 comments · 1 reaction · 0 assignees ·
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backlog
AlexsLemonade/refinebio#210 · 0 comments · 0 reactions · 0 assignees ·
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agilent backlog data science dataviz SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#211 · 7 comments · 0 reactions · 0 assignees ·
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backlog
AlexsLemonade/refinebio#218 · 0 comments · 0 reactions · 0 assignees ·
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backlog surveyor
AlexsLemonade/refinebio#224 · 0 comments · 0 reactions · 0 assignees ·
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backlog surveyor
AlexsLemonade/refinebio#225 · 0 comments · 0 reactions · 0 assignees ·
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backlog surveyor
AlexsLemonade/refinebio#226 · 0 comments · 0 reactions · 0 assignees ·
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backlog design
AlexsLemonade/refinebio#235 · 0 comments · 0 reactions · 0 assignees ·
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backlog question
AlexsLemonade/refinebio#236 · 0 comments · 0 reactions · 0 assignees ·
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backlog quality control question RNA-seq
AlexsLemonade/refinebio#239 · 1 comment · 0 reactions · 0 assignees ·
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backlog question
AlexsLemonade/refinebio#297 · 0 comments · 0 reactions · 0 assignees ·
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backlog processor smasher
AlexsLemonade/refinebio#341 · 9 comments · 0 reactions · 0 assignees ·
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backlog new feature user feedback
AlexsLemonade/refinebio#438 · 3 comments · 0 reactions · 0 assignees ·
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Normalization and processing options for RNA-seq data (when no cross-technology aggregation occurs ) Openbacklog design input question sci review smasher
AlexsLemonade/refinebio#512 · 4 comments · 1 reaction · 0 assignees ·
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Store the genes that were included in the compendium used to generate the reference distribution Openbacklog processor
AlexsLemonade/refinebio#555 · 2 comments · 0 reactions · 0 assignees ·
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Encountered error in R code while running gene_convert_illumina.R pipeline during processing of /... Openbacklog zf crunch
AlexsLemonade/refinebio#571 · 4 comments · 0 reactions · 0 assignees ·
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backlog metadata zf crunch
AlexsLemonade/refinebio#577 · 0 comments · 0 reactions · 0 assignees ·
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backlog devfriendliness documentation
AlexsLemonade/refinebio#700 · 0 comments · 0 reactions · 0 assignees ·
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backlog exploration SCIENCE! (A.K.A. research question) smasher
AlexsLemonade/refinebio#704 · 0 comments · 0 reactions · 0 assignees ·
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backlog sci review smasher
AlexsLemonade/refinebio#716 · 16 comments · 0 reactions · 1 assignee ·
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Lock down S3 buckets Openreview
AlexsLemonade/refinebio#731 · 3 comments · 0 reactions · 1 assignee ·
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backlog no_op
AlexsLemonade/refinebio#733 · 1 comment · 0 reactions · 0 assignees ·
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backlog devops logging
AlexsLemonade/refinebio#900 · 1 comment · 0 reactions · 0 assignees ·
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backlog SCIENCE! (A.K.A. research question)
AlexsLemonade/refinebio#963 · 19 comments · 0 reactions · 0 assignees ·
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backlog bug frontend SCIENCE! (A.K.A. research question) smasher
AlexsLemonade/refinebio#965 · 3 comments · 0 reactions · 0 assignees ·
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in progress
AlexsLemonade/refinebio#969 · 0 comments · 0 reactions · 1 assignee ·
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backlog single cell
AlexsLemonade/refinebio#972 · 0 comments · 0 reactions · 0 assignees ·
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backlog compendia question
AlexsLemonade/refinebio#984 · 0 comments · 0 reactions · 0 assignees ·
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backlog devfriendliness nice to have
AlexsLemonade/refinebio#988 · 2 comments · 0 reactions · 0 assignees ·
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backlog enhancement
AlexsLemonade/refinebio#1099 · 0 comments · 0 reactions · 0 assignees ·
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next question RNA-seq salmon
AlexsLemonade/refinebio#1101 · 5 comments · 0 reactions · 1 assignee ·
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backlog design sci review
AlexsLemonade/refinebio#1107 · 6 comments · 0 reactions · 1 assignee ·
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nice to have
AlexsLemonade/refinebio#1147 · 1 comment · 0 reactions · 0 assignees ·
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data science RNA-seq salmon
AlexsLemonade/refinebio#1159 · 2 comments · 0 reactions · 0 assignees ·