AlexsLemonade / AlexsLemonade/refinebio
Create genome indices for STAR
Open
backlog
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
STAR apparently needs indices for genomes. We can do this with the Index Refinery when we refine transcriptome indices.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by locating the Index Refinery integration and the existing transcriptome-index refinement entry point. Trace how that workflow could include genome indices for STAR, and verify that the completed workflow produces the required genome indices alongside transcriptome indices.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100