AlexsLemonade / AlexsLemonade/refinebio
Salmon -- Alignment-based method and feature counts -- STAR
Open
backlog
processor
RNA-seq
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
TBD whether STAR or Hisat2 will be more appropriate. Will require coordination with @jaclyn-taroni and the Patro lab to clarify which to use and how to do so.
Contributor guide
No contributing guide indexed for this repository
Research direction
The issue names no files, tests, or entry points. Start by resolving whether STAR or Hisat2 is appropriate with @jaclyn-taroni and the Patro lab, including how the alignment-based method and feature counts should work. Done is a documented tool choice and an agreed implementation path.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100