AlexsLemonade / AlexsLemonade/refinebio
Detect Agilent one color vs. two color experiments
Open
agilent
backlog
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
One color and two color experiments will be the same "platform" in GEO or ArrayExpress -- there should be some metadata field that indicates whether a second channel is present
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by tracing how GEO and ArrayExpress experiment metadata is represented in refine.bio. Determine where platform metadata is normalized and how a second channel can be recorded, then verify that one-color and two-color experiments remain distinguishable in the resulting dataset metadata.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100