AlexsLemonade / AlexsLemonade/refinebio

NO_OP For Files with Multiple Samples

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#733 1 comment 0 reactions 0 assignees View on GitHub
backlog no_op
Dominant language
Python
Stars
135
Forks
21
PR merge metrics
No merged PRs in 30d

Description

### Context
These are very tricky:

https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19298/?array=A-AFFY-38&page=1&pagesize=250

Multiple samples, each with multiple unlabeled columns. And they're quite rare:

https://www.ebi.ac.uk/arrayexpress/experiments/browse.html?array=A-AFFY-38

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by inspecting the linked ArrayExpress experiment E-GEOD-19298 and the A-AFFY-38 browse results to understand the multiple-sample, unlabeled-column cases. Trace the existing handling for these files and define the expected no-op behavior before identifying the relevant tests or entry point; done means the cases are handled without producing an incorrect dataset.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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