AlexsLemonade / AlexsLemonade/refinebio
NO_OP For Files with Multiple Samples
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
### Context
These are very tricky:
https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19298/?array=A-AFFY-38&page=1&pagesize=250
Multiple samples, each with multiple unlabeled columns. And they're quite rare:
https://www.ebi.ac.uk/arrayexpress/experiments/browse.html?array=A-AFFY-38
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by inspecting the linked ArrayExpress experiment E-GEOD-19298 and the A-AFFY-38 browse results to understand the multiple-sample, unlabeled-column cases. Trace the existing handling for these files and define the expected no-op behavior before identifying the relevant tests or entry point; done means the cases are handled without producing an incorrect dataset.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100