Owner

qurit

2 indexed repositories · View on GitHub

rt-utils
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Python · 256 stars
PyCNO
Python based methods for computational nuclear oncology.

Jupyter Notebook · 8 stars

Beginner friendly Everything

Open All

pypi package is stuck at 1.2.7 Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

qurit/rt-utils#140 · Opened Aug 3, 2026
The add_roi function in the rt_struct.py has a fundamental problem with the ROI numbering. Open

Difficulty 2/5 1-3 hours Newbie friendliness 72/100

qurit/rt-utils#137 · Opened Apr 21, 2026
Unnecessary system dependency Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

qurit/rt-utils#135 · Opened Dec 18, 2025
Add Exception Handling Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/PyCNO#11 · Opened Nov 6, 2025
Compartment Size Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/PyCNO#10 · Opened Apr 2, 2025
Error when segmentation consists of only one pixel Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

qurit/rt-utils#131 · 1 comment · Opened Mar 6, 2025
RTSTRUCT file is not created correctly Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#128 · 3 comments · Opened Feb 16, 2025
Documentation Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

qurit/PyCNO#9 · Opened Feb 13, 2025
cannot import name 'RTStructMerger' from 'rt_utils' Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

qurit/rt-utils#123 · 1 comment · Opened Dec 11, 2024
Handle duplicate slices Open

Difficulty 2/5 1-3 hours Newbie friendliness 52/100

qurit/rt-utils#122 · Opened Oct 7, 2024
use_pin_hole (x,y) vs (y,x) Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

qurit/rt-utils#115 · 1 comment · Opened Jun 3, 2024
RT-Struct does not always align with the original CT Scan Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#114 · 2 comments · Opened May 27, 2024
No SOPClass UID after add_roi Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

qurit/rt-utils#113 · Opened May 14, 2024
NIfTI to RTStruct - no registration with CT (rotation problem?) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#110 · 3 comments · Opened Apr 24, 2024
Error when using platipy.dicom.io.nifti_to_rtruct function to convert nii to rtstruct: the Mask must have the number of layers saved (in dimension 3) as an input sequence. Expected 65, result 13 Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

qurit/rt-utils#109 · Opened Mar 20, 2024
rt-utils fails on "Radiation therapy simulation head ..." Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

qurit/rt-utils#106 · Opened Mar 3, 2024
RtStruct saved from nifti appears rotated. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#102 · 5 comments · Opened Jan 16, 2024
Return ROI names of geometric type Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

qurit/rt-utils#99 · Opened Oct 30, 2023
Acquisition Count > 1 not supported Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

qurit/rt-utils#98 · Opened Oct 28, 2023
Nonuniform slice thickness Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#97 · Opened Oct 27, 2023
ROIException Error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#95 · Opened Sep 12, 2023
RTs to .nii.gz conversion issue Open

qurit/rt-utils#93 · 1 comment · 1 assignee · Opened Jul 22, 2023
PixelSpacing incorrectly taken into account Open

qurit/rt-utils#92 · 4 comments · 1 assignee · Opened Jul 21, 2023
Empty series and slice mask functions column rather than row first Open

qurit/rt-utils#88 · 2 comments · 1 reaction · 1 assignee · Opened Jun 1, 2023
cv.fillPoly() exception when running rtstruct.get_roi_mask_by_name Open

qurit/rt-utils#87 · 11 comments · 1 assignee · Opened Apr 21, 2023
Pixelated contours preferred Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

qurit/rt-utils#86 · Opened Mar 17, 2023
image(s) that are not contained in input series Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

qurit/rt-utils#82 · Opened Feb 22, 2023
Apply limit to decimal places of ContourData DICOM item Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

qurit/rt-utils#80 · 1 comment · Opened Feb 13, 2023
Add ROIs from polygons Open

Difficulty 4/5 3-5 days Newbie friendliness 40/100

qurit/rt-utils#77 · 3 comments · Opened Feb 8, 2023
Rtstruct Referencing Multiple CT Image Series Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#76 · 2 comments · Opened Feb 7, 2023
Add DICOM attribute `RTROIInterpretedType` as optional parameter to `add_roi` and `ROIData` Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

qurit/rt-utils#73 · 1 comment · 1 reaction · Opened Feb 7, 2023
Add unit tests for merging RT Structs Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

qurit/rt-utils#72 · Opened Feb 1, 2023
ROI_number Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

qurit/rt-utils#66 · 3 comments · Opened Jan 9, 2023
ValueError: could not broadcast input array from shape (512,512) into shape (156,105) Open

Difficulty 3/5 1-2 days Newbie friendliness 18/100

qurit/rt-utils#62 · 2 comments · Opened Oct 31, 2022
Error accessing one ROI name Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

qurit/rt-utils#61 · 1 comment · Opened Oct 17, 2022
How to create mask for tandem and ovoid? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#60 · 11 comments · Opened Oct 3, 2022
Switch to using a logger Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

qurit/rt-utils#58 · 1 reaction · Opened Sep 27, 2022
add roi to existing structure set Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#52 · 1 comment · Opened May 19, 2022
suggestion to avoid issue when multiple types of files are in the same folder Open

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

qurit/rt-utils#51 · 4 comments · Opened May 12, 2022
the possibility of changing one of ROIs volumes. Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

qurit/rt-utils#50 · 4 comments · Opened Mar 15, 2022
Delete ROI Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

qurit/rt-utils#46 · 4 comments · Opened Feb 21, 2022
Not compatible with open-cv < 4.0.0 Open

qurit/rt-utils#45 · 1 assignee · Opened Feb 9, 2022
add ability to retrieve ROI names in a case insensitive way Open

Difficulty 2/5 1-3 hours Newbie friendliness 20/100

qurit/rt-utils#44 · 2 comments · Opened Feb 4, 2022
Use force=True to force reading in rt_utils/image_helper.py (load_dcm_images_from_path ) Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

qurit/rt-utils#39 · 5 comments · Opened Jan 13, 2022
Ability to load SPECT image masks Open

qurit/rt-utils#36 · 1 comment · 1 reaction · 1 assignee · Opened Jan 7, 2022
issue with saggital MR scans Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

qurit/rt-utils#32 · 4 comments · Opened Nov 16, 2021
How to create an RT structure outside of image slices Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

qurit/rt-utils#25 · 1 comment · Opened Jun 20, 2021
RTSTRUCT slice interpolation Open

question

Difficulty 5/5 Over a week Newbie friendliness 20/100

qurit/rt-utils#17 · 3 comments · 1 reaction · Opened Apr 7, 2021
Setting value of "Contour Geometric Type". Open

enhancement

qurit/rt-utils#16 · 4 comments · 1 reaction · 1 assignee · Opened Mar 26, 2021

qurit

Get new issues in your inbox