plotly / plotly/plotly.R

Feature suggestion, integration with gggenes

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描述

Hey folks,

First of all, thank you so much for the library!

This is rather a feature suggestion than an issue, I wonder if you could implement wrappers to integrate gggenes library (https://wilkox.org/gggenes/) with plotly. I really need an interactive versions of genome annotation graphs.


Code I used.

p <- ggplot(phage_genes, aes(xmin = start, xmax = end, y = molecule)) +
  facet_wrap(~ molecule, scales = "free", ncol = 1) +
  geom_gene_arrow(fill = "grey") +
  geom_subgene_arrow(data = phage_annotations,
                     aes(xmin = start, xmax = end, y = molecule, fill = subgene,
                         xsubmin = from, xsubmax = to), color="black", alpha=.7) +
  labs(y='Genome ID', fill='Annotation ID', color=" ", shape=" ")+
  theme_genes() 

ggplotly(p)

Currently, it returns these errors:

  https://github.com/ropensci/plotly/issuesWarning: geom_GeomSubgeneArrow() has yet to be implemented in plotly.
  If you'd like to see this geom implemented,
  Please open an issue with your example code at

  https://github.com/ropensci/plotly/issuesWarning: geom_GeomGeneArrow() has yet to be implemented in plotly.
  If you'd like to see this geom implemented,
  Please open an issue with your example code at
  https://github.com/ropensci/plotly/issuesWarning

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  2. 在 Issue 下留言说明你要接手 —— 这能避免两个人做同样的事。
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  4. 提交 Pull Request,并在描述里引用这个 Issue 编号。

调研方向

首先使用 gggenes 和 ggplotly 重现所提供的 R 示例,重点关注 geom_GeneArrow 和 geom_SubgeneArrow。跟踪现有 ggplot geoms 在 plotly.R 中的处理方式。当该示例生成交互式基因组注释图,且不出现两条未实现 geom 警告中的任何一条时,即表示完成。

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r
领域
data-visualization
Issue 类型
功能
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预计耗时
一周以上
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停滞
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