nf-core/scdownstream
View on GitHubA single cell transcriptomics pipeline for QC, integration and making the data presentable
- Stars
- 115
- Forks
- 66
- Open beginner issues
- 0
- Indexed issues
- 24
- Avg merge
- 11d 6h
- Merged PRs (30d)
- 4
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Sep 17, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- good first issue
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 42/100
nf-core/scdownstream#285 · 2 comments ·
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enhancement
nf-core/scdownstream#283 · 4 comments · 1 assignee ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 48/100
nf-core/scdownstream#275 ·
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enhancement
nf-core/scdownstream#267 · 2 comments · 1 assignee ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#213 ·
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enhancement NBIS
Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/scdownstream#173 ·
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enhancement NBIS
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#172 ·
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enhancement NBIS
nf-core/scdownstream#171 · 11 comments · 2 assignees ·
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enhancement NBIS
Difficulty 3/5 1-2 days Newbie friendliness 38/100
nf-core/scdownstream#169 ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 20/100
nf-core/scdownstream#151 ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 30/100
nf-core/scdownstream#147 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#119 · 1 comment ·
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enhancement good first issue
nf-core/scdownstream#116 · 1 assignee ·
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enhancement good first issue
nf-core/scdownstream#113 · 1 assignee ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 15/100
nf-core/scdownstream#106 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/scdownstream#88 ·
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enhancement NBIS
Difficulty 5/5 Over a week Newbie friendliness 15/100
nf-core/scdownstream#23 · 2 comments ·
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enhancement NBIS
Difficulty 5/5 Over a week Newbie friendliness 10/100
nf-core/scdownstream#22 ·
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enhancement NBIS Needs conda
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#18 ·
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enhancement Needs conda
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#17 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 20/100
nf-core/scdownstream#11 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/scdownstream#6 · 3 comments ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 30/100
nf-core/scdownstream#5 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/scdownstream#4 · 2 comments ·