nf-core / nf-core/scdownstream
Add option for per-sample specification of doublet detection thresholds
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enhancement
- Dominant language
- Nextflow
- Stars
- 115
- Forks
- 66
- Avg merge
- 11d 6h
- Merged PRs (30d)
- 4
Description
Description of feature
Requires adding several columns to the samplesheet, one per doublet detection method
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the pipeline's samplesheet format and how each doublet detection method currently receives its thresholds. Define the per-sample columns for the methods and trace their use through the workflow; done means every supported method can read the appropriate sample-specific threshold without breaking existing samplesheets.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100