nf-core / nf-core/scdownstream
Add support for local/custom celltypist models
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 115
- Forks
- 66
- Avg merge
- 11d 6h
- Merged PRs (30d)
- 4
Description
Description of feature
As requested via slack
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue does not name any files, tests, or entry points. Start by locating the pipeline's CellTypist integration and its model configuration, then determine how a local or custom model should be supplied. Done means the pipeline accepts and uses such a model, with behavior verified by an appropriate pipeline test.
Written by the indexing model from the issue text.
Assessment
- Domain
- machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100