nf-core / nf-core/scdownstream
Add flag to prevent writing of intermediate anndata objects to the working directory
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 115
- Forks
- 66
- Avg merge
- 11d 6h
- Merged PRs (30d)
- 4
Description
Description of feature
As discussed with NBIS
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue body only states a request to add a flag preventing intermediate anndata objects from being written and refers to an undisclosed NBIS discussion; it names no files, tests, or entry points. First find where the pipeline writes these objects and clarify the intended flag behavior, then verify that enabling it prevents those writes without affecting the pipeline output.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100