nf-core / nf-core/scdownstream
Implement pathway analysis using WebGestaltR
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 115
- Forks
- 66
- Avg merge
- 11d 6h
- Merged PRs (30d)
- 4
Description
Can be based on the implementation in scFlow
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the pathway-analysis implementation in scFlow and determine how its WebGestaltR usage maps to this pipeline. Clarify the expected inputs, outputs, and integration point before implementing; done means pathway analysis is available in scdownstream with behavior consistent with the scFlow reference.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100