Owner

WormBase

2 indexed repositories · View on GitHub

ACKnowledge
Author Curation to Knowledgebases

JavaScript · 3 stars
caltech-curation-services
Modular curation services for Caltech WormBase data

Perl · 1 star

Beginner friendly Everything

Open All

Convert form pdf links to Alliance Open

WormBase/caltech-curation-services#23 · 2 comments · 1 assignee · Opened Mar 1, 2023
Talk to Wen about simplemine file structure for how to scp things in Open

WormBase/caltech-curation-services#20 · 2 comments · 1 assignee · Opened Feb 23, 2023
Add additional genes for string matching (Zebrafish) Open

zebrafish

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#253 · 1 comment · Opened Jun 3, 2022
Add new section to form for adding comparator genome genes Open

curation_interface multispecies

WormBase/ACKnowledge#242 · 1 comment · 1 assignee · Opened Feb 21, 2022
Port paper editor to docker Open

WormBase/caltech-curation-services#11 · 1 comment · 1 assignee · Opened Feb 17, 2022
Dockerize Xml file folders and scripts from tazendra Open

WormBase/caltech-curation-services#10 · 2 comments · 1 assignee · Opened Feb 17, 2022
Merge related repo or delete them if obsolete/not needed Open

WormBase/caltech-curation-services#1 · 1 comment · 1 assignee · Opened Nov 23, 2021
Add a free text field to the dashboard to keep track of curatorial notes, including email communication with authors. Open

dashboard

Difficulty 3/5 1-2 days Newbie friendliness 30/100

WormBase/ACKnowledge#211 · 2 comments · Opened Aug 13, 2021
Add entities (e.g., genes) linked to another type of entities (e.g., alleles) extracted by the pipeline Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

WormBase/ACKnowledge#202 · Opened May 28, 2021
Integrate predictions on transgenes, variations, strains Open

entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#185 · 1 comment · Opened Feb 26, 2021
Species related datatypes Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

WormBase/ACKnowledge#171 · 1 comment · Opened Aug 24, 2020
Extract genes from all C. elegans papers with TFIDF=10 and save the results to pap_gene Open

ntt_extraction_pipelines

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#164 · 1 comment · Opened May 15, 2020
Add pie chart with number of added entities by journal Open

dashboard entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#150 · 2 comments · Opened Feb 20, 2020
Integrate curation status with author paper page Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#129 · Opened Sep 6, 2019
Community outreach Open

WormBase/ACKnowledge#122 · 4 comments · 2 assignees · Opened Aug 16, 2019
To discuss: present interconnected data in a single table Open

entity extraction

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#121 · 2 comments · Opened Aug 16, 2019
remove 'yeast' from species aliases Open

ACKnowledge

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

WormBase/ACKnowledge#92 · 9 comments · Opened Jun 14, 2019
show a summary of the form to the author at the end of the submission process Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#110 · 1 comment · Opened Nov 2, 2018
simplified form for review articles Open

reviews

Difficulty 5/5 Over a week Newbie friendliness 20/100

WormBase/ACKnowledge#109 · 2 comments · Opened Oct 5, 2018
(for the future) ts, lf alleles Open

ntt_extraction_pipelines

WormBase/ACKnowledge#106 · 1 comment · 2 assignees · Opened Sep 5, 2018

WormBase

Get new issues in your inbox