PEtab-dev / PEtab-dev/libpetab-python
writer functions do not perform sanity checks + use misleading options for writing tsv
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- Lenguaje dominante
- Python
- Estrellas
- 18
- Forks
- 9
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- Sin PR fusionados en 30 d
Descripción
When having dedicated writer functions such as petab.conditions.write_condition_df etc, I would actually expect that they perform some kind of sanity check on the output. Having pretty bare wrappers around pd.to_csv doesn't seem to helpful, especially since the writers use index=True, which is not consistent with the providede spec and, since the readers don't use index_col=0, leaves an Unnamed 0 column in the imported DataFrame.
Guía de contribución
Primeros pasos
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Línea de trabajo
Start with the dedicated writer entry points mentioned, such as petab.conditions.write_condition_df, and trace their pd.to_csv options alongside the corresponding readers. Compare the output with the PEtab specification and verify that imported DataFrames do not gain an Unnamed 0 column. Done means the writers perform the required sanity checks and use consistent TSV-writing options.
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Evaluación
- Stack tecnológico
- pandas, python
- Área
- data
- Tipo de issue
- Error
- Dificultad
- 4/5
- Tiempo estimado
- 3-5 días
- Estado de actividad
- Estancado
- Claridad
- Bastante claro
- Aptitud para principiantes
- 35/100