PEtab-dev / PEtab-dev/libpetab-python
writer functions do not perform sanity checks + use misleading options for writing tsv
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- 主要语言
- Python
- 星标
- 18
- 派生
- 9
- PR 合并指标
- 30 天内没有已合并 PR
描述
When having dedicated writer functions such as petab.conditions.write_condition_df etc, I would actually expect that they perform some kind of sanity check on the output. Having pretty bare wrappers around pd.to_csv doesn't seem to helpful, especially since the writers use index=True, which is not consistent with the providede spec and, since the readers don't use index_col=0, leaves an Unnamed 0 column in the imported DataFrame.
贡献指南
从这里开始
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- Fork 仓库,在一个分支上完成修改。
- 提交 Pull Request,并在描述里引用这个 Issue 编号。
调研方向
Start with the dedicated writer entry points mentioned, such as petab.conditions.write_condition_df, and trace their pd.to_csv options alongside the corresponding readers. Compare the output with the PEtab specification and verify that imported DataFrames do not gain an Unnamed 0 column. Done means the writers perform the required sanity checks and use consistent TSV-writing options.
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评估
- 技术栈
- pandas, python
- 领域
- data
- Issue 类型
- 缺陷
- 难度
- 4/5
- 预计耗时
- 3-5 天
- 活跃度
- 停滞
- 描述清晰度
- 基本清楚
- 新手友好度
- 35/100