PEtab-dev / PEtab-dev/libpetab-python

writer functions do not perform sanity checks + use misleading options for writing tsv

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主要語言
Python
星號
18
分支
9
PR 合併指標
30 天內沒有已合併 PR

描述

When having dedicated writer functions such as petab.conditions.write_condition_df etc, I would actually expect that they perform some kind of sanity check on the output. Having pretty bare wrappers around pd.to_csv doesn't seem to helpful, especially since the writers use index=True, which is not consistent with the providede spec and, since the readers don't use index_col=0, leaves an Unnamed 0 column in the imported DataFrame.

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研究方向

Start with the dedicated writer entry points mentioned, such as petab.conditions.write_condition_df, and trace their pd.to_csv options alongside the corresponding readers. Compare the output with the PEtab specification and verify that imported DataFrames do not gain an Unnamed 0 column. Done means the writers perform the required sanity checks and use consistent TSV-writing options.

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評估

技術堆疊
pandas, python
領域
data
Issue 類型
缺陷
難度
4/5
預估耗時
3-5 天
活躍度
停滯
描述清晰度
基本清楚
新手友好度
35/100

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