PEtab-dev / PEtab-dev/libpetab-python
writer functions do not perform sanity checks + use misleading options for writing tsv
還沒有人認領這個 Issue。
- 主要語言
- Python
- 星號
- 18
- 分支
- 9
- PR 合併指標
- 30 天內沒有已合併 PR
描述
When having dedicated writer functions such as petab.conditions.write_condition_df etc, I would actually expect that they perform some kind of sanity check on the output. Having pretty bare wrappers around pd.to_csv doesn't seem to helpful, especially since the writers use index=True, which is not consistent with the providede spec and, since the readers don't use index_col=0, leaves an Unnamed 0 column in the imported DataFrame.
貢獻指南
從這裡開始
- 先讀完整個 Issue,再讀專案的貢獻指南。
- 在 Issue 下留言說明你要接手 —— 這能避免兩個人做同樣的事。
- Fork 儲存庫,在一個分支上完成修改。
- 送出 Pull Request,並在描述裡引用這個 Issue 編號。
研究方向
Start with the dedicated writer entry points mentioned, such as petab.conditions.write_condition_df, and trace their pd.to_csv options alongside the corresponding readers. Compare the output with the PEtab specification and verify that imported DataFrames do not gain an Unnamed 0 column. Done means the writers perform the required sanity checks and use consistent TSV-writing options.
由索引模型根據 Issue 內容生成。
評估
- 技術堆疊
- pandas, python
- 領域
- data
- Issue 類型
- 缺陷
- 難度
- 4/5
- 預估耗時
- 3-5 天
- 活躍度
- 停滯
- 描述清晰度
- 基本清楚
- 新手友好度
- 35/100