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Imageomics

58 indexed repositories · View on GitHub

• bioclip

  This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

  Python · 278 stars

• bioclip-2

  Repository for the BioCLIP 2 model project. [NeurIPS'25 Spotlight] BioCLIP 2 is a biological foundation model trained on TreeOfLife-200M....

  Python · 93 stars

• Prompt_CAM

  This is an official implementation for PROMPT-CAM: A Simpler Interpretable Transformer for Fine-Grained Analysis (CVPR'25). Explore fine-...

  Jupyter Notebook · 78 stars

• pybioclip

  Python package and CLI that simplifies using the BioCLIP family of foundation models.

  Python · 67 stars

• saev

  Sparse autoencoders for vision

  Python · 66 stars

• Finer-CAM

  This is an official implementation for Finer-CAM: Spotting the Difference Reveals Finer Details for Visual Explanation. [CVPR'25] Better ...

  Jupyter Notebook · 53 stars

• TaxonoPy

  A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

  Python · 19 stars

• SST

  Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation". Ideal f...

  Jupyter Notebook · 14 stars

• biobench

  Computer vision benchmark for evolutionary biology-related tasks.

  Python · 10 stars

• kabr-tools

  Modular tools pipeline for annotating animal behavior. These were specifically designed during construction of the KABR dataset, and have...

  Python · 10 stars

• catalog

  Catalog app for Imageomics code, data, models, and spaces hosted on GitHub and Hugging Face. Designed for improved discoverability of Ima...

  JavaScript · 10 stars

• phylo-diffusion

  Implementation of "Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution" [ECCV 2024]

  Python · 8 stars

• mmla

  Scripts for MMLA dataset

  Jupyter Notebook · 7 stars

• wildwing

  Autonomous UAS Software for In Situ Imageomics Missions

  HTML · 7 stars

• TreeOfLife-toolbox

  Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.

  Jupyter Notebook · 7 stars

• dashboard-prototype

  Prototype data dashboard for Imageomics Data

  Python · 6 stars

• wing-segmentation

  Butterfly wing segmentation

  Jupyter Notebook · 6 stars

• Imageomics-guide

  Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.

  Python · 6 stars

• emb-explorer

  An interactive tool for classifying images with a pretrained model and exploring clustering results in 2D space.

  Python · 6 stars

• FuncaPalooza-2025

  FuncaPalooza: collaborative hands-on event for extracting functional traits from images at OSU, Aug 18-21, 2025.

  5 stars

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