BlueBrain/NeuroMorphoVis

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A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

Stars: 138
Forks: 27
Open beginner issues: 0
Indexed issues: 58

Dominant language: Python
License: GPL-3.0
Last GitHub push: Oct 29, 2025
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue help wanted
PR merge metrics: No merged PRs in 30d

Open All

58 open issues indexed

Adding support to create perspective renderings for media generation. Open

enhancement

BlueBrain/NeuroMorphoVis#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Integrating the subsurface scattering shader. Open

enhancement good first issue

BlueBrain/NeuroMorphoVis#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Morphology Exporter: Adding support to export the morphologies to H5 files. Open

enhancement

BlueBrain/NeuroMorphoVis#17 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Using ffmpeg to encode the sequences' frames into .mp4 videos. Open

enhancement help wanted

BlueBrain/NeuroMorphoVis#19 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
One button to render them all. Open

enhancement

BlueBrain/NeuroMorphoVis#35 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding feature to taper the terminals of the last sections along the morphology. Open

BlueBrain/NeuroMorphoVis#44 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add support to variate the roughness of the mesh surface. Open

enhancement

BlueBrain/NeuroMorphoVis#59 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Connect the floating branches that are not emanating from the soma. Open

enhancement

BlueBrain/NeuroMorphoVis#63 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Morphology Visualization - Branching Samples Radii Open

enhancement

BlueBrain/NeuroMorphoVis#74 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding Movie Creation Script Open

enhancement help wanted

BlueBrain/NeuroMorphoVis#86 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Skinning Mesh Builder Artifacts Open

bug enhancement

BlueBrain/NeuroMorphoVis#106 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Intersecting sections emanating from the soma are not handled correctly. Open

bug

BlueBrain/NeuroMorphoVis#112 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Simple color interpolation function w/o matplotlib Open

enhancement

BlueBrain/NeuroMorphoVis#114 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Simple circuit builder Open

BlueBrain/NeuroMorphoVis#118 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Mesh Tool -> MetaBalls fails (Windows) Open

BlueBrain/NeuroMorphoVis#119 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Adding support to read three-dimensional somata and build them accurately. Open

enhancement

BlueBrain/NeuroMorphoVis#120 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add the ability to show dendrites outline when doing soma reconstruction Open

BlueBrain/NeuroMorphoVis#121 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Clean the old data directories that are not needed. Open

enhancement

BlueBrain/NeuroMorphoVis#127 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding reconstructed soma details in the UI Open

enhancement

BlueBrain/NeuroMorphoVis#129 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add support to make users able to run the CLI on the cluster? Open

BlueBrain/NeuroMorphoVis#133 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Adding support to render closeups on all the branches in the reconstructed mesh. Open

BlueBrain/NeuroMorphoVis#134 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Adding support in the interface to create the morphology analysis result with and without the analysis figure. Open

BlueBrain/NeuroMorphoVis#135 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Account for the samples radii when computing the bounding box of the morphology Open

BlueBrain/NeuroMorphoVis#136 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Fixing the illumination for Cycles based shaders Open

bug

BlueBrain/NeuroMorphoVis#151 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Design unit tests for NMV Open

enhancement help wanted

BlueBrain/NeuroMorphoVis#152 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add further analysis items for the astrocytes (part 2) Open

BlueBrain/NeuroMorphoVis#155 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Unhandled division by zero Open

BlueBrain/NeuroMorphoVis#165 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Missing vertex group when using soft body to build soma Open

bug

BlueBrain/NeuroMorphoVis#166 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Resample the morphology skeleton in the Edit Panel Open

enhancement good first issue

BlueBrain/NeuroMorphoVis#170 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Resampling skeleton for SamplesBuilder Open

bug

BlueBrain/NeuroMorphoVis#174 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add multiple coloring options to the dendrogram Open

BlueBrain/NeuroMorphoVis#175 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Resampling astrocyte Open

enhancement

BlueBrain/NeuroMorphoVis#177 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Showing endfeet in a progressive renderer Open

bug enhancement

BlueBrain/NeuroMorphoVis#178 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Color adjustments for synaptics Open

bug

BlueBrain/NeuroMorphoVis#179 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Allow NMV to read GIDs with the charcter 'a' appended to them. Open

good first issue

BlueBrain/NeuroMorphoVis#180 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
No spines are drawn on the first section of some dendrites Open

bug

BlueBrain/NeuroMorphoVis#181 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Adjust noise levels based on the tessellation Open

enhancement

BlueBrain/NeuroMorphoVis#182 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Documentation for the new feature for the release version 2.0 Open

enhancement

BlueBrain/NeuroMorphoVis#183 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Missing Synapses in Voxelization-based remeshing Open

bug

BlueBrain/NeuroMorphoVis#185 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Freestyle shader adds unwanted transparency Open

bug

BlueBrain/NeuroMorphoVis#188 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Allow NMV to load the dependencies on-the-fly Open

bug enhancement

BlueBrain/NeuroMorphoVis#191 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Bug loading morphologies in release Open

bug

BlueBrain/NeuroMorphoVis#192 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding a panel to show the system packages and the context Open

enhancement

BlueBrain/NeuroMorphoVis#193 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Focus on dendrites while loading the morphology Open

enhancement

BlueBrain/NeuroMorphoVis#194 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Apply a random coloring scheme to the neurons either for the sections or the segments. Open

enhancement

BlueBrain/NeuroMorphoVis#195 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Rendeirng somata sequences does not consider the given resolution Open

bug

BlueBrain/NeuroMorphoVis#196 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Adding support to render all possible views of the morphology. Open

enhancement

BlueBrain/NeuroMorphoVis#198 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Installer broken by h5py, webbrowser, et al Open

BlueBrain/NeuroMorphoVis#201 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Allow exporting after section removal Open

BlueBrain/NeuroMorphoVis#202 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Allow editing morphology section types Open

BlueBrain/NeuroMorphoVis#203 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

BlueBrain/NeuroMorphoVis

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