BlueBrain / BlueBrain/NeuroMorphoVis

Allow exporting after section removal

Open
#202 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
138
Forks
27
PR merge metrics
No merged PRs in 30d

Description

For a given morphology , especially with new full brain reconstructions, we need to be able to subsample or edit morphologies. One example is Mouselight morphologies where axons are so wide, its not possible to use it on local circuit building in tools for in-silico circuit building. For that , I edited the morphology and removed the unnecessary regions but current version of neuromorphoviz cannot export the edited morphology, only traslocation of nodes are allowed.

Would be great to have that so we can utilize Allen and Mouselight morphologies

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by locating the morphology editing workflow and the existing export entry point, then trace how removed sections are represented before export. The work is done when a morphology edited by removing unnecessary regions can be exported, in addition to morphologies with only node translations.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-graphics
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
38/100

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