ggplotly not working when plotting circular ggtree
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Description
Hello,
When I try to plot through ggplotly a graph generated through ggree with circular layout it results in a error.
Example code and error:
library(MicrobiotaProcess)
library(ggtree)
data(kostic2012crc)
taxa <- tax_table(kostic2012crc)
tree <- as.treedata(taxa, include.rownames=TRUE)
ggtree(tree, layout="circular", size=0.2) +
geom_tiplab(size=1) ->p
plotly::ggplotly(p)
ERROR:
Error in rng[[xy]]$get_labels() : attempt to apply non-function
In addition: Warning messages:
1: In min(z[["x"]]$dimension %()% z$x.range %||% z$x_range) :
no non-missing arguments to min; returning Inf
2: In max(z[["x"]]$dimension %()% z$x.range %||% z$x_range) :
no non-missing arguments to max; returning -Inf
3: In min(z[["y"]]$dimension %()% z$y.range %||% z$y_range) :
no non-missing arguments to min; returning Inf
4: In max(z[["y"]]$dimension %()% z$y.range %||% z$y_range) :
no non-missing arguments to max; returning -Inf
5: In geom2trace.default(dots[[1L]][[1L]], dots[[2L]][[1L]], dots[[3L]][[1L]]) :
geom_GeomTextGGtree() has yet to be implemented in plotly.
If you'd like to see this geom implemented,
Please open an issue with your example code at
https://github.com/ropensci/plotly/issues
6: In geom2trace.default(dots[[1L]][[1L]], dots[[2L]][[1L]], dots[[3L]][[1L]]) :
geom_GeomTextGGtree() has yet to be implemented in plotly.
If you'd like to see this geom implemented,
Please open an issue with your example code at
https://github.com/ropensci/plotly/issues
When I try with ggtree(tree, layout="dendrogram", size=0.2) +
geom_tiplab(size=1) ->p
plotly::ggplotly(p)
It works.
It seems that it does not like the circular format.
Any tips?
Thanks
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the reported example with plotly::ggplotly(), ggtree(tree, layout="circular"), and geom_tiplab(). Compare it with the working dendrogram layout and inspect the geom_GeomTextGGtree warning. Done means the circular plot converts without the reported error and warnings, while preserving the labels.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data-visualization
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100