nf-core/website

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Code and files for the main nf-core website.

Stars: 98
Forks: 298
Open beginner issues: 0
Indexed issues: 122
Avg merge: 14h 38m
Merged PRs (30d): 38

Dominant language: MDX
License: MIT
Last GitHub push: Sep 19, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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122 open issues indexed

Spec says additional docs pages are rendered automatically; only docs/usage/ and docs/output/ actually are Open

nf-core/website#4408 · 1 assignee · Opened Sep 19, 2026
Broken link in documentation: [404] Page not found: https://nf-co.re/sarek/3.10.0/docs/output/ Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 85/100

nf-core/website#4401 · Opened Sep 16, 2026
[404] Page not found: https://nf-co.re/images/graphic_design_assets/workflow_schematics_components/generic/nf-core_components.xml Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 76/100

nf-core/website#4400 · Opened Sep 15, 2026
Pipeline pages should list version compatibility Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 68/100

nf-core/website#4398 · Opened Sep 11, 2026
More details to specifications/pipelines/requirements/workflow_specificity page Open

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

nf-core/website#4320 · 1 comment · 1 reaction · Opened Jul 23, 2026
Feature request: Add `contributor-graphs` plot to each pipeline page. Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

nf-core/website#4281 · 1 reaction · Opened Jun 24, 2026
[404] Page not found: https://nf-co.re/docs/contributing/sync Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 68/100

nf-core/website#4255 · Opened Jun 12, 2026
[404] Page not found: https://training.nextflow.io/ Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 75/100

nf-core/website#4243 · Opened Jun 1, 2026
[404] Page not found: https://nf-co.re/docs/nf-core-tools/cli/subworkflows/create Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 68/100

nf-core/website#4208 · 2 comments · Opened May 11, 2026
[404] Page not found: https://nf-co.re/docs/developing/tutorials/writing-nf-core-modules/2-getting-started Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 78/100

nf-core/website#4191 · 1 comment · Opened Apr 30, 2026
docs: adding large datasets to s3://nf-core-awsmegatests Open

documentation enhancement

Difficulty 3/5 1-2 days Newbie friendliness 68/100

nf-core/website#4165 · 1 comment · Opened Apr 22, 2026
advisory for nf-core/ampliseq is missing incompatible Nextflow version Open

bug

nf-core/website#4120 · 2 comments · 3 assignees · Opened Apr 7, 2026
docs: move in-page troubleshooting sections to separate pages Open

docs-version-2 documentation

nf-core/website#4093 · 1 assignee · Opened Mar 25, 2026
docs: remaining unaddressed pages for docs-v2 overhaul Open

docs-version-2 documentation

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/website#4092 · Opened Mar 25, 2026
docs: split/link ext.args into user and developer sections (docs-v2) Open

docs-version-2 documentation post-v2

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/website#4079 · 2 comments · Opened Mar 22, 2026
Add blogpost for very important pipelines Open

blog enhancement

nf-core/website#3719 · 2 comments · 1 assignee · Opened Jan 19, 2026
Set up GitHub Action to post to social media a list of new modules of the month/week Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

nf-core/website#3703 · 3 comments · Opened Jan 6, 2026
Add support for displaying `CONTRIBUTING.md` on the nf-core website Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nf-core/website#3653 · 3 comments · Opened Nov 14, 2025
Add blog post about topics for modules versions collection Open

enhancement

nf-core/website#3609 · 1 assignee · Opened Oct 29, 2025
Topics Documentation Open

enhancement

nf-core/website#3606 · 3 assignees · Opened Oct 29, 2025
[Regulatory] Provide Guideline for running validation on top of nf-core reports Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/website#3605 · Opened Oct 28, 2025
[Regulatory] Write down security aspects of using nf-core pipelines Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/website#3604 · Opened Oct 28, 2025
[Regulatory] Provide larger overview on what the regulatory spceial interest group intends to build Open

enhancement regulatory

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/website#3603 · Opened Oct 28, 2025
Meta Issue for Regulatory Special Interest Group Open

enhancement regulatory

nf-core/website#3600 · 1 assignee · Opened Oct 28, 2025
[404] Link to "CI/CD integration" does not exist on https://nf-co.re/docs/tutorials/tests_and_test_data/nf-test_comprehensive_guide Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 65/100

nf-core/website#3559 · 1 comment · Opened Oct 14, 2025
Set up automation for social posts Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/website#3540 · Opened Oct 6, 2025
improve documentation about ci-runners Open

documentation

nf-core/website#3510 · 1 assignee · Opened Sep 26, 2025
[404] Page not found: https://bioinformatics.ccr.cancer.gov/ Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 20/100

nf-core/website#3504 · 1 comment · Opened Sep 24, 2025
[training] Use nf-core/modules for the local modules in hello/nf-core Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/website#3502 · Opened Sep 23, 2025
Link to nextflow training Hello nf-core Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

nf-core/website#3501 · 1 reaction · Opened Sep 23, 2025
Pull governance members from GitHub Teams Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/website#3499 · Opened Sep 22, 2025
[404] Page not found: https://github.com/nf-core/mhcquant/tree/master?tab=readme-ov-file Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

nf-core/website#3492 · Opened Sep 17, 2025
Documentation Tasks for Devcontainer Open

bug

nf-core/website#3487 · 1 comment · 1 assignee · Opened Sep 9, 2025
nf-core tools documentation is incomplete Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

nf-core/website#3482 · Opened Aug 29, 2025
Allow to filter subworkflows by included components Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/website#3479 · Opened Aug 27, 2025
Overhaul documentation structure and content Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

nf-core/website#3460 · 1 reaction · Opened Aug 8, 2025
[404] Page not found: https://nf-co.re/rnaseq/3.19.0/ Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

nf-core/website#3457 · Opened Aug 7, 2025
Markdown issues on website (API docs) Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/website#3390 · Opened Jun 12, 2025
Make sure that all references to old tests are updated (i.e. running pipeline tests with `nextflow run`) Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

nf-core/website#3380 · Opened Jun 3, 2025
launch: make simplified view Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/website#3357 · Opened May 15, 2025
[404] Page not found: https://nf-co.re/configs/nci_gadi/ Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 68/100

nf-core/website#3269 · 1 comment · Opened Mar 25, 2025
lauch pipeline should have an option to output yaml as well as Json Open

enhancement first-timers-only

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nf-core/website#3261 · Opened Mar 24, 2025
Add Github codespaces documentation Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 42/100

nf-core/website#3248 · Opened Mar 22, 2025
Copy Button for parameters Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nf-core/website#3134 · Opened Mar 3, 2025
Bug in nf-core/subworkflows Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/website#3121 · Opened Feb 27, 2025
Missing documentation for ordering of config loading Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/website#3057 · Opened Feb 10, 2025
Render the new args section from the meta.yml Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nf-core/website#3041 · Opened Feb 5, 2025
Static event page Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/website#2877 · 1 comment · Opened Dec 3, 2024
Improve docs/guidelines/regulatory/ Open

enhancement regulatory

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/website#2862 · 1 comment · Opened Nov 22, 2024
Pipeline health page: indicate Nobel prizes for pipelines Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/website#2826 · Opened Oct 28, 2024

nf-core/website

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