nf-core/variantprioritization
View on GitHubBioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter (PCGR). The pipeline offers germline SNVs/INDELS intepretation and annotation using Cancer Predisposition Sequencing Reporter (CPSR).
- Stars
- 16
- Forks
- 11
- Open beginner issues
- 0
- Indexed issues
- 9
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Jul 27, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
- PR merge metrics
- No merged PRs in 30d
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
nf-core/variantprioritization#98 · 1 reaction ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 55/100
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
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enhancement
nf-core/variantprioritization#87 · 2 assignees ·
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Add parameter --sex Openenhancement
nf-core/variantprioritization#86 · 1 comment · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
nf-core/variantprioritization#77 · 1 comment ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
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enhancement
nf-core/variantprioritization#62 · 2 assignees ·
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nf-core/variantprioritization#28 · 2 assignees ·