nf-core / nf-core/variantprioritization
Add test with tumor-only VCF files
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enhancement
- Dominant language
- Nextflow
- Stars
- 16
- Forks
- 11
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Currently we only have test data that was generated with tumor-normal pairs. To increase test coverage we want to have test data that was generated in tumor-only mode.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files or test entry points. Start by locating the existing tumor-normal test data and the tests that consume it, then determine how tumor-only VCF data is configured. Done means tumor-only test data is added and the relevant pipeline test coverage passes.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing-qa
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100