nf-core / nf-core/variantprioritization
Add parameter --sex
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enhancement
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Description
Description of feature
Hi,
Gender information is relevant to estimate the copy number state of sex chromosomes, example: Loss-of Y, XCA, etc. hence it is a relevant parameter.
When it is not provided, PCGR reports this message:
Argument --sex is 'UNKNOWN' - skipping copy number loss annotations on sex chromosomes
So, it is good to have this option added.
The tool documentation page is here:
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