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imodpasteur

6 indexed repositories · View on GitHub

ANNA-PALM
Accelerating Single Molecule Localization Microscopy with Deep Learning

Python · 54 stars
ZOLA-3D
Zernike Optimized Localization Algorithm for 3D single molecule localizations

Java · 19 stars
Brightfield-Drift-Correction-3D
Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

Python · 11 stars
pySPIRALTAP
Sparse Poisson Intensity Reconstruction ALgorithms

Jupyter Notebook · 9 stars
ShareLoc.XYZ
A platform for sharing localization microscopy data.

JavaScript · 3 stars
shareloc-utils
Utility tools for ShareLoc.XYZ

Python · 0 stars

Beginner friendly Everything

Open All

No widefield in Dominic Helmerich datasets Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

imodpasteur/ShareLoc.XYZ#108 · Opened Mar 27, 2023
Download widefield images Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imodpasteur/shareloc-utils#193 · Opened Mar 23, 2023
Download window for *.txt dosn't pop up Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

imodpasteur/ShareLoc.XYZ#104 · Opened Jan 5, 2023
Can't Import pySPIRALTAP Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

imodpasteur/pySPIRALTAP#1 · Opened Dec 21, 2022
Potree viewer Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#84 · 4 comments · Opened Jul 5, 2022
Zenodo ID not consistent Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

imodpasteur/ShareLoc.XYZ#75 · Opened May 25, 2022
upload via script Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#67 · 1 comment · Opened Mar 28, 2022
Share link error Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imodpasteur/ShareLoc.XYZ#64 · Opened Sep 28, 2021
Error when table has a few localization Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#60 · Opened Sep 14, 2021
Two modes Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

imodpasteur/ShareLoc.XYZ#59 · 1 comment · Opened Sep 13, 2021
Clean the shareloc platform Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#56 · Opened Sep 12, 2021
upload more samples Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#54 · Opened Aug 19, 2021
Buffer allocation failed Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#53 · 1 comment · Opened Aug 13, 2021
Upload issue v0.4.1/3 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#51 · 10 comments · Opened Aug 9, 2021
Make tagging style guide to show suggestions for each type of tags Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#41 · Opened Aug 3, 2021
Fix the images in the slides about "Publish the dataset" Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#35 · 2 comments · Opened Jul 19, 2021
Support filtering in the viewer Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#32 · Opened Jul 19, 2021
Error when converting csv to image Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ANNA-PALM#30 · 1 comment · Opened Oct 5, 2020
Cuda 10.1 libraries working in linux; not windows for GPU drift correction Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imodpasteur/ZOLA-3D#9 · 4 comments · Opened Mar 6, 2020
scipy 1.0.0 hard requirement? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imodpasteur/ANNA-PALM#25 · Opened Feb 19, 2020
ValueError Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ANNA-PALM#17 · 10 comments · Opened Sep 28, 2019
ThorLabs DM settings from model PSF Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ZOLA-3D#8 · 2 comments · Opened Jun 23, 2019
Error when using sCMOS corrections Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

imodpasteur/ZOLA-3D#7 · 3 comments · Opened Apr 10, 2019
Partially reconstructed data Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

imodpasteur/Brightfield-Drift-Correction-3D#6 · Opened Nov 9, 2018
Better default name to save the localization tabke Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

imodpasteur/ZOLA-3D#3 · 3 reactions · Opened Jun 22, 2018
Saving filtered dataset Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

imodpasteur/ShareLoc.XYZ#1 · Opened Jun 15, 2018
Export csv from .smlm file Open

enhancement website

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imodpasteur/ANNA-PALM#10 · Opened May 16, 2018
Support training with .smlm file Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imodpasteur/ANNA-PALM#9 · Opened May 16, 2018
"Show result" button does nothing when 3D is enabled Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

imodpasteur/ANNA-PALM#8 · Opened Apr 18, 2018
Cannot share when 3D is enabled. Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imodpasteur/ANNA-PALM#6 · 1 comment · Opened Apr 16, 2018
Cannot open the 3D viewer -- default point size too small Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 20/100

imodpasteur/ANNA-PALM#5 · 1 comment · Opened Apr 16, 2018
Cannot view the error map Open

enhancement Imagej plugin website

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imodpasteur/ANNA-PALM#4 · 1 comment · Opened Apr 16, 2018
Cannot process non-microtubule data Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 20/100

imodpasteur/ANNA-PALM#3 · 1 comment · Opened Apr 16, 2018
Adapt to different size of the input image Open

Imagej plugin

Difficulty 4/5 3-5 days Newbie friendliness 30/100

imodpasteur/ANNA-PALM#2 · Opened Apr 13, 2018
Widefield image do not display propery Open

website

Difficulty 3/5 1-2 days Newbie friendliness 45/100

imodpasteur/ANNA-PALM#1 · Opened Apr 13, 2018

imodpasteur

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