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imodpasteur

6 indexed repositories · View on GitHub

ANNA-PALM
Accelerating Single Molecule Localization Microscopy with Deep Learning

Python · 54 stars
ZOLA-3D
Zernike Optimized Localization Algorithm for 3D single molecule localizations

Java · 19 stars
Brightfield-Drift-Correction-3D
Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

Python · 11 stars
pySPIRALTAP
Sparse Poisson Intensity Reconstruction ALgorithms

Jupyter Notebook · 9 stars
ShareLoc.XYZ
A platform for sharing localization microscopy data.

JavaScript · 3 stars
shareloc-utils
Utility tools for ShareLoc.XYZ

Python · 0 stars

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Can't Import pySPIRALTAP Open

imodpasteur/pySPIRALTAP#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Better default name to save the localization tabke Open

imodpasteur/ZOLA-3D#3 · 0 comments · 3 reactions · 0 assignees · Indexed Sep 17, 2026
Error when using sCMOS corrections Open

imodpasteur/ZOLA-3D#7 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
ThorLabs DM settings from model PSF Open

imodpasteur/ZOLA-3D#8 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Cuda 10.1 libraries working in linux; not windows for GPU drift correction Open

imodpasteur/ZOLA-3D#9 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Download widefield images Open

imodpasteur/shareloc-utils#193 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Widefield image do not display propery Open

website

imodpasteur/ANNA-PALM#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Adapt to different size of the input image Open

Imagej plugin

imodpasteur/ANNA-PALM#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Cannot process non-microtubule data Open

enhancement

imodpasteur/ANNA-PALM#3 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Cannot view the error map Open

enhancement Imagej plugin website

imodpasteur/ANNA-PALM#4 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Cannot open the 3D viewer -- default point size too small Open

bug

imodpasteur/ANNA-PALM#5 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Cannot share when 3D is enabled. Open

bug

imodpasteur/ANNA-PALM#6 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
"Show result" button does nothing when 3D is enabled Open

imodpasteur/ANNA-PALM#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Support training with .smlm file Open

imodpasteur/ANNA-PALM#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Export csv from .smlm file Open

enhancement website

imodpasteur/ANNA-PALM#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
ValueError Open

imodpasteur/ANNA-PALM#17 · 10 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
scipy 1.0.0 hard requirement? Open

imodpasteur/ANNA-PALM#25 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error when converting csv to image Open

imodpasteur/ANNA-PALM#30 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Partially reconstructed data Open

imodpasteur/Brightfield-Drift-Correction-3D#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Saving filtered dataset Open

imodpasteur/ShareLoc.XYZ#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Support filtering in the viewer Open

imodpasteur/ShareLoc.XYZ#32 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Fix the images in the slides about "Publish the dataset" Open

imodpasteur/ShareLoc.XYZ#35 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Make tagging style guide to show suggestions for each type of tags Open

imodpasteur/ShareLoc.XYZ#41 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Upload issue v0.4.1/3 Open

imodpasteur/ShareLoc.XYZ#51 · 10 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Buffer allocation failed Open

imodpasteur/ShareLoc.XYZ#53 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
upload more samples Open

imodpasteur/ShareLoc.XYZ#54 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Clean the shareloc platform Open

imodpasteur/ShareLoc.XYZ#56 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Two modes Open

imodpasteur/ShareLoc.XYZ#59 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error when table has a few localization Open

imodpasteur/ShareLoc.XYZ#60 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Share link error Open

imodpasteur/ShareLoc.XYZ#64 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
upload via script Open

imodpasteur/ShareLoc.XYZ#67 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Zenodo ID not consistent Open

imodpasteur/ShareLoc.XYZ#75 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Potree viewer Open

imodpasteur/ShareLoc.XYZ#84 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Download window for *.txt dosn't pop up Open

imodpasteur/ShareLoc.XYZ#104 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
No widefield in Dominic Helmerich datasets Open

imodpasteur/ShareLoc.XYZ#108 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026

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