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ga4gh
85 indexed repositories · View on GitHub
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benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
HTML · 213 stars
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phenopacket-schema
Repository for the GA4GH phenopacket schema
Java · 101 stars
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vrs
Extensible specification for representing and uniquely identifying biological sequence variation
Jupyter Notebook · 98 stars
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95 stars
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workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
94 stars
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data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
64 stars
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vrs-python
GA4GH Variation Representation Python Implementation
Python · 62 stars
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tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
Shell · 35 stars
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mme-apis
Documentation for the MatchmakerExchange APIs
HTML · 34 stars
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va-spec
An information model for representing variant annotations.
Jupyter Notebook · 27 stars
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quality-control-wgs
GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations
Jupyter Notebook · 26 stars
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data-connect
Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.
HTML · 25 stars
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data-security
This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
Python · 25 stars
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refget
GA4GH Refget specifications docs
17 stars
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htsget
Python client for GA4GH htsget protocol
Python · 15 stars
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ga4gh-sdk
Generic SDK and CLI for GA4GH API services
Rust · 15 stars
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Jupyter Notebook · 13 stars
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pedigree
Repository for the family history/pedigree project
13 stars
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htsget-refserver
Reference server implementation for the GA4GH HTSget API standard.
Go · 12 stars
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TASC
TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used togeth...
12 stars
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ga4gh/dwg-website#1 · 1 comment · 0 reactions · 1 assignee ·
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ga4gh/dwg-website#2 · 0 comments · 0 reactions · 1 assignee ·
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ga4gh/dwg-website#4 · 4 comments · 0 reactions · 0 assignees ·
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ga4gh/dwg-website#7 · 2 comments · 0 reactions · 0 assignees ·
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See workflow service Open
ga4gh/workflow-execution-server#1 · 0 comments · 0 reactions · 0 assignees ·
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ga4gh/hackathon2016#1 · 12 comments · 0 reactions · 1 assignee ·
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ga4gh/hackathon2016#2 · 0 comments · 1 reaction · 1 assignee ·
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ga4gh/hackathon2016#3 · 1 comment · 3 reactions · 1 assignee ·
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ga4gh/hackathon2016#4 · 0 comments · 0 reactions · 1 assignee ·
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ga4gh/hackathon2016#5 · 3 comments · 0 reactions · 1 assignee ·
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Genomics HTTP Server Open
ga4gh/hackathon2016#6 · 4 comments · 0 reactions · 1 assignee ·
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ga4gh/task-execution-server#5 · 5 comments · 1 reaction · 0 assignees ·
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ga4gh/task-execution-server#6 · 3 comments · 0 reactions · 0 assignees ·
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question
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Describe properties Openenhancement
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bug
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bug
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ga4gh/metadata-team#4 · 2 comments · 0 reactions · 0 assignees ·
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ga4gh/ga4gh-consent-policy#7 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
ga4gh/ga4gh-consent-policy#14 · 0 comments · 0 reactions · 0 assignees ·
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Only need a schema Open
ga4gh/ga4gh-consent-policy#15 · 0 comments · 0 reactions · 0 assignees ·
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Reverse lookup draft Open
ga4gh/reverse-lookup-spec#1 · 5 comments · 0 reactions · 0 assignees ·
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ga4gh/cloud-interop-ui#1 · 1 comment · 0 reactions · 0 assignees ·
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feature
ga4gh/ga4gh-service-registry#14 · 0 comments · 0 reactions · 0 assignees ·
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feature
ga4gh/ga4gh-service-registry#16 · 1 comment · 0 reactions · 0 assignees ·
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feature
ga4gh/ga4gh-service-registry#17 · 1 comment · 0 reactions · 0 assignees ·
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elixir feature
ga4gh/ga4gh-service-registry#35 · 3 comments · 0 reactions · 0 assignees ·
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Add write operations Openelixir feature
ga4gh/ga4gh-service-registry#65 · 1 comment · 0 reactions · 1 assignee ·
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feature
ga4gh/ga4gh-service-registry#90 · 0 comments · 0 reactions · 0 assignees ·
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feature
ga4gh/ga4gh-service-registry#102 · 0 comments · 0 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#13 · 3 comments · 0 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#15 · 4 comments · 0 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#27 · 7 comments · 4 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#29 · 2 comments · 0 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#30 · 2 comments · 0 reactions · 0 assignees ·
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ga4gh/benchmarking-tools#31 · 0 comments · 0 reactions · 0 assignees ·
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CalledProcessError Open
ga4gh/benchmarking-tools#33 · 0 comments · 0 reactions · 0 assignees ·
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Project: Testbed Type: Maintenance
ga4gh/cloud-interop-testing#35 · 0 comments · 0 reactions · 0 assignees ·
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Testbed targets OpenProject: Testbed
ga4gh/cloud-interop-testing#52 · 1 comment · 0 reactions · 1 assignee ·
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Add documentation OpenProject: Testbed Type: Documentation
ga4gh/cloud-interop-testing#49 · 0 comments · 0 reactions · 0 assignees ·
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Project: Testbed Type: Enhancement
ga4gh/cloud-interop-testing#60 · 0 comments · 0 reactions · 0 assignees ·
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Project: Testbed Type: Enhancement
ga4gh/cloud-interop-testing#61 · 0 comments · 0 reactions · 0 assignees ·
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Project: Testbed
ga4gh/cloud-interop-testing#68 · 0 comments · 0 reactions · 0 assignees ·
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Project: Testbed
ga4gh/cloud-interop-testing#69 · 0 comments · 0 reactions · 0 assignees ·
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