ga4gh/cloud-interop-testing

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Interoperable execution of workflows using GA4GH APIs

Stars: 9
Forks: 8
Open beginner issues: 0
Indexed issues: 42

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 30, 2019
Latest indexed: Sep 16, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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42 open issues indexed

Add integration tests Open

Project: Testbed Type: Maintenance

ga4gh/cloud-interop-testing#35 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Testbed targets Open

Project: Testbed

ga4gh/cloud-interop-testing#52 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Add documentation Open

Project: Testbed Type: Documentation

ga4gh/cloud-interop-testing#49 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Use real databases for queuing and config Open

Project: Testbed Type: Enhancement

ga4gh/cloud-interop-testing#60 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Remove hard dependency on `wes-service` Open

Project: Testbed Type: Enhancement

ga4gh/cloud-interop-testing#61 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Determine strategy for encoding test plugin methods Open

Project: Testbed

ga4gh/cloud-interop-testing#68 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Identify and review ready-to-use compliance test packages Open

Project: Testbed

ga4gh/cloud-interop-testing#69 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Create script or notebook with example DRS compliance tests Open

Project: DRS Project: Testbed

ga4gh/cloud-interop-testing#70 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Set up models and controllers to use database backend Open

Project: Testbed

ga4gh/cloud-interop-testing#71 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Repurpose `testbed.py` code as TRS/WES test plugin methods Open

Project: Testbed Project: TRS Project: WES

ga4gh/cloud-interop-testing#72 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Repurpose `orchestrator.py` code for plugins and tests Open

Project: Testbed Project: WES

ga4gh/cloud-interop-testing#73 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Repurpose `config.py` code as server class methods and controller functions Open

Project: Testbed

ga4gh/cloud-interop-testing#74 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Update test/plugin models to include attributes, methods for to 'status' Open

Project: Testbed

ga4gh/cloud-interop-testing#75 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Add docker-compose script for app components Open

Project: Testbed

ga4gh/cloud-interop-testing#76 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 16, 2026
Create a prototype UI/dashboard for the testbed Open

Project: Testbed

ga4gh/cloud-interop-testing#77 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Investigate use of TravisCI for launching the testbed orchestrator and running tests (at least for now) Open

Project: Testbed

ga4gh/cloud-interop-testing#78 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Move various testbed-related docs to shared Drive folder Open

ga4gh/cloud-interop-testing#87 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Cloud - Write a pull request for WES showing use of DRS for inputs/outputs Open

Federated Priority: Medium Project: DRS Project: WES

ga4gh/cloud-interop-testing#88 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Writeup of scientific use case for our work Open

Federated Needs Champion Priority: Medium

ga4gh/cloud-interop-testing#89 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
DNAstack/Google - technical implementation writeup for others to follow for Plenary demo, how to add your component Open

Federated Priority: Low

ga4gh/cloud-interop-testing#90 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
DNAstack/Google - writeup of what was learned from golden demo v0 from the 7th Plenary Open

Federated Priority: Low

ga4gh/cloud-interop-testing#91 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Passport use with APIs, how are access tokens created? Open

Priority: Medium WS: DURI

ga4gh/cloud-interop-testing#92 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
DNAstack/Google write up instructions on how to stand up the golden demo Open

Federated Priority: Low

ga4gh/cloud-interop-testing#93 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Collect API feedback and provide to work streams - focus on Cloud first since AAI in progress Open

Federated Priority: Medium WS: Cloud

ga4gh/cloud-interop-testing#94 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 16, 2026
How to add Discovery endpoints (figure out what discovery work happens here) Open

Needs Champion WS: Discovery

ga4gh/cloud-interop-testing#95 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
How to add Data endpoints (DRS) Open

Needs Champion WS: Cloud

ga4gh/cloud-interop-testing#96 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
DNAStack/Google Code from Golden Demo made available, modularized Open

Federated Needs Champion Priority: Medium Status: Help Wanted

ga4gh/cloud-interop-testing#97 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Planning for FASP Hackathon Open

Federated Priority: Medium

ga4gh/cloud-interop-testing#98 · 11 comments · 0 reactions · 2 assignees · Indexed Sep 16, 2026
Start working with Stephanie Li on video on 5/18 call Open

Needs Champion Priority: Medium

ga4gh/cloud-interop-testing#99 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Write up background on cart service based on what was found by talking to Elixir, Terra, U. Chicago, etc. Open

Federated Priority: High Status: Accepted WS: DURI

ga4gh/cloud-interop-testing#100 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
How to add WES endpoint Open

Federated Needs Champion

ga4gh/cloud-interop-testing#101 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
How to report back full stack success beyond DNAstack/Google demo to FASP Open

Federated Needs Champion

ga4gh/cloud-interop-testing#102 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Service Info - we need to add it to DRS, TES, TRS, and WES and make minor releases Open

Hackathon exercise Needs Champion Priority: High Project: DRS Project: TES Project: TRS Project: WES

ga4gh/cloud-interop-testing#103 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Mapping accessions/logical entities to DRS/ physical objects Open

Hackathon exercise

ga4gh/cloud-interop-testing#104 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Test how content type can be indicated in DRS and acted upon Open

Hackathon exercise

ga4gh/cloud-interop-testing#105 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Test out unpacking of DRS Bundles, including objects of different types Open

Hackathon exercise

ga4gh/cloud-interop-testing#106 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Explore how to query for large regions of deletions in NCI Cancer Data stored in BigQuery Open

Hackathon exercise

ga4gh/cloud-interop-testing#107 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Add WES and Discovery Search to FASP Python examples Open

Hackathon exercise

ga4gh/cloud-interop-testing#108 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 16, 2026
Execution error on FASP GWAS submission Open

ga4gh/cloud-interop-testing#110 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Getting results back from DNAStack WES Open

ga4gh/cloud-interop-testing#111 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Anvil PFB export from GTEx fails on BigQuery import Open

ga4gh/cloud-interop-testing#112 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Duplicate rows in GTEx v8 PFB export Open

ga4gh/cloud-interop-testing#113 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026

ga4gh/cloud-interop-testing

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