ga4gh / ga4gh/cloud-interop-testing
Explore how to query for large regions of deletions in NCI Cancer Data stored in BigQuery
Open
Hackathon exercise
- Dominant language
- Python
- Stars
- 9
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
For the FASP Hackathon ISB-CGC Bioinformaticians will create example BigQuery queries that identify in NCI public datasets deleted regions of chromosomes. Examples will be provided of these explorations.
Contributor guide
No contributing guide indexed for this repository
Research direction
Begin by reviewing the NCI public datasets in BigQuery and the examples supplied for the FASP Hackathon. Define done as documented example queries that identify large deleted chromosome regions and can be run against the relevant public datasets.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- sql
- Domain
- data, databases
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100