ga4gh / ga4gh/benchmarking-tools
Benchmarking my dataset
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- Dominant language
- HTML
- Stars
- 212
- Forks
- 47
- PR merge metrics
- No merged PRs in 30d
Description
Hi,
I want to benchmark my variant calls (not GIAB or platinum dataset). How should i do with the help of this tool?
Thanks
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. Start by reviewing the repository's existing usage documentation and determine whether it explains benchmarking custom variant calls rather than GIAB or platinum datasets. Done means providing a decided, reproducible workflow or clarifying that the tool does not support this use case.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100