ga4gh/refget

View on GitHub

GA4GH Refget specifications docs

Stars: 17
Forks: 10
Open beginner issues: 0
Indexed issues: 16
Avg merge: 11m
Merged PRs (30d): 1

Dominant language: No language data
License: No license data
Last GitHub push: Aug 21, 2026
Latest indexed: Sep 16, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Open All

16 open issues indexed

Consumption of seqcol into existing file formats Open

external-integration refget-seqcol

ga4gh/refget#13 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Reverse complement of a sequence and possible supporting reverse complemented coordinates Open

refget-sequence

ga4gh/refget#15 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Would molecule designation also know about how many strands there are? Open

refget-seqcol schema-term

ga4gh/refget#16 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Fingerprinting sequences using gaps Open

refget-seqcol schema-term

ga4gh/refget#29 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Identifier construction: To prefix or not to prefix Open

refget-seqcol

ga4gh/refget#37 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Alphabet as inherent property of a sequence collection Open

refget-seqcol schema-term

ga4gh/refget#46 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Should we prefix the digests that we return from seqcol? Open

refget-seqcol

ga4gh/refget#53 · 9 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Test suite? Open

refget-seqcol

ga4gh/refget#74 · 15 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
New schema term: accessions Open

refget-seqcol schema-term

ga4gh/refget#79 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
More powerful list endpoint for additional search function Open

refget-seqcol

ga4gh/refget#88 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
refget: v2 spec for Range header errors does not align with typical usage Open

invalid refget-sequence

ga4gh/refget#89 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Graph representations and refget pangenomes Open

refget-pangenomes

ga4gh/refget#103 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Dealing with pangenome multi-level names Open

refget-pangenomes

ga4gh/refget#104 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Refget Sequences returning subsequences and choice of 200 vs 206 status code Open

refget-sequence

ga4gh/refget#106 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Refget Sequences start/end query parameter and range request corner cases Open

refget-sequence

ga4gh/refget#107 · 4 comments · 0 reactions · 2 assignees · Indexed Sep 16, 2026
Schema term tracker Open

schema-term

ga4gh/refget#110 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026

ga4gh/refget

Get new issues in your inbox